PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn247721

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 755aa MW: 87722.7 Da PI: 7.3193

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn247721	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37.1	1e-11	72	126	36	89
FAR1 36 skegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +++g+++++++k + +++r+r etr+gC a++ v+k+++g w v+ +e++HnH++ Achn247721 72 NRKGFEKKDTRKmQLQKKRRRGETRVGCGARIYVNKTDEGMWAVSLFEEDHNHKC 126 789999988888677899999********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-10	72	126	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-29	249	343	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.681	528	566	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.4E-4	541	568	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	4.2E-6	542	563	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 755 aa Download sequence Send to blast
MVYNLEDFDA EIYDEKEYID ELYGHEEHDG DDTEDRLEDL NMENEEIDVN NVEKPYVGMK 60 FESDDDAYVF YNRKGFEKKD TRKMQLQKKR RRGETRVGCG ARIYVNKTDE GMWAVSLFEE 120 DHNHKCETPK KCHLFTSHRR VDGNQGAMIE KMNEAGIRKN LMMHYLSEEA QGRRNVGFTE 180 RDMRNYLHSK RAKTFEKGDA QCLLDYLNEK QLENPHFFYA IQLDAEAQMT NFFWVDAKAR 240 MDYSYFGDVV CFDTTYGTNA YAKPFIPIVG VNNHLQTTLF GCALMLDETV TSFQWVLQTW 300 MKVMKGFHPK LIFTDQDAAM AAAIANILPN TCHRFCLWHI FQNVKKHLSH LFRRGSLFGK 360 DFSHCIRSFE TVEDFEMGWD ALLTKYNLHD NEWVAKLYSK RQKWVPVYSH DFFCADMSTT 420 QRSESINNFF KGFLQRNMLL LDFVRGVDKA LVSRREAEID ADFYMNNVIP PLVLHMPIEE 480 VASKLYTPCL FRKFQEELIG SLRYTCEKIK EEGPNSTYKC KIVNKEIKER IVSFNSLDHS 540 VKCSCCKFTF MGILCKHILR VFIVENVHQI PEQYILKRWS ADAKDGVVTD DNGAQLRENC 600 HAPLTLRYSI LCHEAINIAT SGASSIEVFE VARQGLRRTK CEVETVKKKQ STNNINDCPM 660 NEKNVNNQAE NIVIREPDIV KTKGRPGRYK AFWEKKNSKK QKAKGSTMRE SPTGTGHRQN 720 TRDKGSYQCP NINDTNVLNN IINQSGHLAT FDKQ*

Sequence ? help Back to Top

Protein Sequence Length: 755 aa Download sequence Send to blast

MVYNLEDFDA EIYDEKEYID ELYGHEEHDG DDTEDRLEDL NMENEEIDVN NVEKPYVGMK  60
FESDDDAYVF YNRKGFEKKD TRKMQLQKKR RRGETRVGCG ARIYVNKTDE GMWAVSLFEE  120
DHNHKCETPK KCHLFTSHRR VDGNQGAMIE KMNEAGIRKN LMMHYLSEEA QGRRNVGFTE  180
RDMRNYLHSK RAKTFEKGDA QCLLDYLNEK QLENPHFFYA IQLDAEAQMT NFFWVDAKAR  240
MDYSYFGDVV CFDTTYGTNA YAKPFIPIVG VNNHLQTTLF GCALMLDETV TSFQWVLQTW  300
MKVMKGFHPK LIFTDQDAAM AAAIANILPN TCHRFCLWHI FQNVKKHLSH LFRRGSLFGK  360
DFSHCIRSFE TVEDFEMGWD ALLTKYNLHD NEWVAKLYSK RQKWVPVYSH DFFCADMSTT  420
QRSESINNFF KGFLQRNMLL LDFVRGVDKA LVSRREAEID ADFYMNNVIP PLVLHMPIEE  480
VASKLYTPCL FRKFQEELIG SLRYTCEKIK EEGPNSTYKC KIVNKEIKER IVSFNSLDHS  540
VKCSCCKFTF MGILCKHILR VFIVENVHQI PEQYILKRWS ADAKDGVVTD DNGAQLRENC  600
HAPLTLRYSI LCHEAINIAT SGASSIEVFE VARQGLRRTK CEVETVKKKQ STNNINDCPM  660
NEKNVNNQAE NIVIREPDIV KTKGRPGRYK AFWEKKNSKK QKAKGSTMRE SPTGTGHRQN  720
TRDKGSYQCP NINDTNVLNN IINQSGHLAT FDKQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-157	FAR1-related sequence 5