PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn247421

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C3H

Protein Properties

Length: 354aa MW: 39120.1 Da PI: 7.4614

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn247421	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.5	1.8e-06	115	136	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C f++ G C Gd C FaHg Achn247421 115 VACAEFRK-GACLKGDACEFAHG 136 6799**.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	2.8E-4	111	137	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.206	112	138	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	16	146	169	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.071	146	170	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MVMPDETPRS NPTVQVPPWD LLDDPTATIA SPFSVNVDAT SYDATLAALH RYLPSNSEDC 60 DVPMDAFSCD HFRMFEFKVR KCARARSHDW TECPFAHPGE KARRRDPRRH HYSGVACAEF 120 RKGACLKGDA CEFAHGVFEC WLHPARYRTQ PCKDGTHCRR RVCFFAHTPD QLRVLPQTSP 180 RVSELYDGSP SRLVFDANGS FGLSPTSTLY SPPVSPPSES PPMSPSGFNS LNELTASVRN 240 LQIGSPRMSM SPPSWGIQMG SGYCSPRSPS TLRPGFLSLP STPTRVPARS GLGVFDLWGQ 300 THDEEPLMER VESGKDLRAK IYSKLSKDNS LDRVDSSGPS PGPDFGWVLE LVK*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MVMPDETPRS NPTVQVPPWD LLDDPTATIA SPFSVNVDAT SYDATLAALH RYLPSNSEDC  60
DVPMDAFSCD HFRMFEFKVR KCARARSHDW TECPFAHPGE KARRRDPRRH HYSGVACAEF  120
RKGACLKGDA CEFAHGVFEC WLHPARYRTQ PCKDGTHCRR RVCFFAHTPD QLRVLPQTSP  180
RVSELYDGSP SRLVFDANGS FGLSPTSTLY SPPVSPPSES PPMSPSGFNS LNELTASVRN  240
LQIGSPRMSM SPPSWGIQMG SGYCSPRSPS TLRPGFLSLP STPTRVPARS GLGVFDLWGQ  300
THDEEPLMER VESGKDLRAK IYSKLSKDNS LDRVDSSGPS PGPDFGWVLE LVK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028109565.1	1e-165	zinc finger CCCH domain-containing protein 20-like
Swissprot	O82199	1e-110	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBL	A0A2R6Q302	0.0	A0A2R6Q302_ACTCH; Zinc finger CCCH domain-containing protein
STRING	VIT_04s0008g00610.t01	1e-155	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1857	21	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-113	C3H family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]