PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn246281
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 491aa    MW: 53752.7 Da    PI: 8.771
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn246281genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.15.5e-1996182186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W++  +  L++a+ ++ ++l+rg+l++ +Weev++ +  r ++ ++s +qCk+k +nl+kryk ++++++++   s s++p+f+++e
  Achn246281  96 EWSDAAIASLLDAYLDKFTQLNRGNLRGRDWEEVAASVseRCEKHTKSVEQCKNKVDNLKKRYKLERHRMNNG-GVSASHWPWFKKME 182
                 5*************************************7777899************************9998.566679*******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.9E-2194182No hitNo description
Gene3DG3DSA:3.40.1160.102.0E-58234483IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536337.52E-47237483IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042546.61E-94239484No hitNo description
PfamPF006961.6E-20241463IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MASCDDDFAL LADDNTPPPN PNIDHHHVAA FVHPLQLPPS AADPIPFDDE SDPNKSSDKR  60
RDRDEISDGG TPYSHKRSKL SAAGAGDGEC RKDREEWSDA AIASLLDAYL DKFTQLNRGN  120
LRGRDWEEVA ASVSERCEKH TKSVEQCKNK VDNLKKRYKL ERHRMNNGGV SASHWPWFKK  180
MELIVGNSLQ SKVVSEDEKA VAGTSNSVRQ SKRYGTATSS PGGQIIALKS KPLTNPRWRR  240
VVFKISGTAL AGTVPQNIDP KIFSSTCQPP LKSAITLFHM AVVLKAEPKG RPKYTGERDS  300
IRNPRRSANE AKQLRCDSEI VTSMMATVMN SILLQSALEK MGIKTRVQTA FSMPEVAEPY  360
SRQRAIRHLE KGRVVIFGGI GAGTGNPLFS TDTAAALRAS EIQADAVLKG TNVDGVYLCD  420
SRNNNVVSEH ISFRELASRG ASPMDMMAVT FCEENGIPVV LFNLHEPGNI SRALCGEQVG  480
TRIDQTGRVS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1z9d_A3e-492364835238uridylate kinase
1z9d_B3e-492364835238uridylate kinase
1z9d_C3e-492364835238uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4751283e-78AM475128.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X048092.27, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028058714.10.0uncharacterized protein LOC114262547
TrEMBLA0A2R6PX670.0A0A2R6PX67_ACTCH; Uridylate kinase
STRINGVIT_08s0007g04160.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87282427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-177Trihelix family protein