PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn245061

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 341aa MW: 38849.4 Da PI: 6.2482

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn245061	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.4	3.9e-55	13	139	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL +kv ++++++ +++ e+d++kvePwdLp k+k +e+ewyfF+ rd+ky+tg r+nrat++gyWkatgkdk+v++ ++l Achn245061 13 LPPGFRFHPTDEELITHYLSEKVINTSFNA-KIVGEIDLNKVEPWDLPWKAKMGETEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKDVYR-MKTL 109 79************************99.89***********888999*************************************.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg+kktLvfykgrapkgek++Wvmheyrle Achn245061 110 VGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 139 ****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-61	10	163	IPR003441	NAC domain
PROSITE profile	PS51005	59.315	13	163	IPR003441	NAC domain
Pfam	PF02365	3.2E-29	14	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MEKVFHDEEE IELPPGFRFH PTDEELITHY LSEKVINTSF NAKIVGEIDL NKVEPWDLPW 60 KAKMGETEWY FFCVRDRKYP TGLRTNRATE AGYWKATGKD KDVYRMKTLV GMKKTLVFYK 120 GRAPKGEKSN WVMHEYRLEG NCSFPNLPET AKNEWVICRV FEKGSGGKRT HISSLGRMRN 180 DGEKLDSQNL PPLMEYSAYS DSQTRTTSFE ISHVSHVTCF SQNDIAQSFN KIPLVHSDTS 240 PVSMLCSNSS VSDSLFSTQF VPYTRNSEYR DGDVRFFIQN NGGIDKKFSK SEFSNDTGNM 300 STDLSSAVSG YNKMGQGYFG DQEDLISSHG PVDLDCFWNC *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-54	10	169	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-54	10	169	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-54	10	169	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-54	10	169	14	171	NO APICAL MERISTEM PROTEIN
4dul_A	8e-54	10	169	14	171	NAC domain-containing protein 19
4dul_B	8e-54	10	169	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028111639.1	1e-143	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-117	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2R6RUG5	0.0	A0A2R6RUG5_ACTCH; NAC domain-containing protein
STRING	XP_006431201.1	1e-132	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-120	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]