PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn245061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 341aa MW: 38849.4 Da PI: 6.2482 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.4 | 3.9e-55 | 13 | 139 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL +kv ++++++ +++ e+d++kvePwdLp k+k +e+ewyfF+ rd+ky+tg r+nrat++gyWkatgkdk+v++ ++l Achn245061 13 LPPGFRFHPTDEELITHYLSEKVINTSFNA-KIVGEIDLNKVEPWDLPWKAKMGETEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKDVYR-MKTL 109 79**************************99.89***************888999****************************************.999* PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg+kktLvfykgrapkgek++Wvmheyrle Achn245061 110 VGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 139 ****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-61 | 10 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.315 | 13 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-29 | 14 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MEKVFHDEEE IELPPGFRFH PTDEELITHY LSEKVINTSF NAKIVGEIDL NKVEPWDLPW 60 KAKMGETEWY FFCVRDRKYP TGLRTNRATE AGYWKATGKD KDVYRMKTLV GMKKTLVFYK 120 GRAPKGEKSN WVMHEYRLEG NCSFPNLPET AKNEWVICRV FEKGSGGKRT HISSLGRMRN 180 DGEKLDSQNL PPLMEYSAYS DSQTRTTSFE ISHVSHVTCF SQNDIAQSFN KIPLVHSDTS 240 PVSMLCSNSS VSDSLFSTQF VPYTRNSEYR DGDVRFFIQN NGGIDKKFSK SEFSNDTGNM 300 STDLSSAVSG YNKMGQGYFG DQEDLISSHG PVDLDCFWNC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-54 | 10 | 169 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-54 | 10 | 169 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-54 | 10 | 169 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-54 | 10 | 169 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 8e-54 | 10 | 169 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 8e-54 | 10 | 169 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028111639.1 | 1e-143 | NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 1e-117 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A2R6RUG5 | 0.0 | A0A2R6RUG5_ACTCH; NAC domain-containing protein | ||||
STRING | XP_006431201.1 | 1e-132 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-120 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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