PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn244901 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 335aa MW: 37545.7 Da PI: 8.804 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.3 | 0.00016 | 125 | 173 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + + erE+ Rd++N f eL l +a ++ + Ka+ L A++ +++L Achn244901 125 KIHKAEREKLKRDDLNVLFLELSNTLEPA----HQNNGKASLLSNATRLLRDL 173 567889**********************9....78899999999999988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.213 | 123 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-9 | 124 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-5 | 124 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MTPNDDDVIV HVRGHCCQIF IPSSPRDVLL YLNSVPVRIG CSSHAVVCQR TPPRGSASTK 60 FQTIFSLIFS SWSLCSIGFL IPRKLRMVSE APGPLTDDIN VVTEKPVISR RFSRSKVNPV 120 KIPKKIHKAE REKLKRDDLN VLFLELSNTL EPAHQNNGKA SLLSNATRLL RDLLCQVDAL 180 KKENTSLLSE SHYVSSEKAE LREEKSALQA QIEDLKIEIQ ERIHSKYAWK FDHSQTQHKT 240 ASQLQEDHLV MPVYDHASQP APVLGPLFVV PFHHHDFPVH RESDTSDPAS KVPSNISRPH 300 ARYPSSSDAW PSQILAKQSE TTQMTQRTNS GTSS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028096471.1 | 1e-111 | transcription factor bHLH47-like | ||||
Refseq | XP_028096472.1 | 1e-111 | transcription factor bHLH47-like | ||||
TrEMBL | A0A2R6RUM0 | 1e-180 | A0A2R6RUM0_ACTCH; Transcription factor bHLH47 like | ||||
STRING | XP_010258393.1 | 7e-76 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4307 | 19 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 6e-33 | bHLH family protein |