PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn243291
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ZF-HD
Protein Properties Length: 266aa    MW: 30651.9 Da    PI: 9.92
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn243291genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer68.11.5e-2181135358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                   vrY+eC++N Aa++  +++DGCg+f+p  ge gt++ + C  CgCHRnFHRre+ 
   Achn243291  81 VVRYRECQHNYAARVMRYTFDGCGDFLPR-GEPGTSKFMLCGVCGCHRNFHRREEM 135
                  69**************************9.888********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-1279133IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.1E-2182134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.2E-1783133IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152319.89784133IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.1E-20188252IPR009057Homeodomain-like
SuperFamilySSF466897.08E-12190254IPR009057Homeodomain-like
TIGRFAMsTIGR015652.9E-22196251IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGKSYVLEYE ESVHQEDRPP NSKFFPGSLN LVDYDNSCNK KIRNYGRAKS IKASLHDSLC  60
LPSLFISLME TNNGDVRGEA VVRYRECQHN YAARVMRYTF DGCGDFLPRG EPGTSKFMLC  120
GVCGCHRNFH RREEMYLPRS SHQTSRVQLF NPPTTTAFPQ PQSHNVKHAR VRNPPTLESP  180
LTAPLDHEEA KEMGMKRKRR TNFTQAQKDR MREFSEKLGW KLKGHGKEIH QFCEDIGITR  240
QILKVWINNN KRLMRPGQPS STHQV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1352883e-33BT135288.1 Lotus japonicus clone JCVI-FLLj-20P21 unknown mRNA.
GenBankDQ0088023e-33DQ008802.1 Tasmannia insipida large subunit ribosomal RNA gene, partial sequence; mitochondrial.
GenBankDQ0088263e-33DQ008826.1 Trimenia moorei large subunit ribosomal RNA gene, partial sequence; mitochondrial.
GenBankEU0248283e-33EU024828.1 Fragaria vesca subsp. americana clone fosmid 11D02, complete sequence.
GenBankGU3635343e-33GU363534.1 Fragaria vesca subsp. americana isolate mt67326 mitochondrial sequence.
GenBankJN8725513e-33JN872551.2 Lotus japonicus strain MG-20 mitochondrion, complete genome.
GenBankKC1899473e-33KC189947.1 Vicia faba mitochondrion, complete genome.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108891118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-33homeobox protein 22