PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn242051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 353aa MW: 38815.4 Da PI: 7.7521 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 101.4 | 8.9e-32 | 172 | 228 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e e+kl +k rkpylheSRh+hA++R+R+sgGrF Achn242051 172 QEPVYVNAKQYHGILRRRQSRAKAELERKL-IKVRKPYLHESRHQHAMKRARASGGRF 228 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.8E-35 | 170 | 231 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.85 | 171 | 231 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.3E-27 | 173 | 228 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 9.7E-24 | 174 | 196 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 176 | 196 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 9.7E-24 | 205 | 228 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 353 aa Download sequence Send to blast |
MEVVKSYPTH TRSSILPIPP YPPPSSGKSA ENSSYPSLRE QSKDDQSQSD DGVDEEDDDA 60 IKESHISASP HSGNSFLSDT NGSLVSRIDE NYGPDHRNFQ HQTSAIHSRS NESLTQPQQL 120 ELVGHSIPCA SNPYFDPYYG GIMATYGPQS LVPPHLLDTN NARMPLPLEM TQEPVYVNAK 180 QYHGILRRRQ SRAKAELERK LIKVRKPYLH ESRHQHAMKR ARASGGRFAK KSDSNALKST 240 AKETGRASGS AISSGSEPLH CETAETNNGH QEAKGLEVHE TCEVRRYDND QYQNRSRFQA 300 STYGANSANG AEGGSIGQQW GSHSSNKASQ RCHNVSVSTD SWSTVCHLSK KA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-18 | 171 | 228 | 1 | 58 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028114277.1 | 1e-129 | nuclear transcription factor Y subunit A-1-like | ||||
Refseq | XP_028114278.1 | 1e-129 | nuclear transcription factor Y subunit A-1-like | ||||
TrEMBL | A0A2R6PFN5 | 0.0 | A0A2R6PFN5_ACTCH; Nuclear transcription factor Y subunit A-1 like | ||||
STRING | XP_010102352.1 | 1e-93 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3111 | 22 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G12840.3 | 4e-52 | nuclear factor Y, subunit A1 |