PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn242051
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YA
Protein Properties Length: 353aa    MW: 38815.4 Da    PI: 7.7521
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn242051genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.48.9e-32172228158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 +ep+YVNaKQy++Il+RRq+Rak+e e+kl +k rkpylheSRh+hA++R+R+sgGrF
  Achn242051 172 QEPVYVNAKQYHGILRRRQSRAKAELERKL-IKVRKPYLHESRHQHAMKRARASGGRF 228
                 69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.8E-35170231IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.85171231IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.3E-27173228IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.7E-24174196IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860176196IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.7E-24205228IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEVVKSYPTH TRSSILPIPP YPPPSSGKSA ENSSYPSLRE QSKDDQSQSD DGVDEEDDDA  60
IKESHISASP HSGNSFLSDT NGSLVSRIDE NYGPDHRNFQ HQTSAIHSRS NESLTQPQQL  120
ELVGHSIPCA SNPYFDPYYG GIMATYGPQS LVPPHLLDTN NARMPLPLEM TQEPVYVNAK  180
QYHGILRRRQ SRAKAELERK LIKVRKPYLH ESRHQHAMKR ARASGGRFAK KSDSNALKST  240
AKETGRASGS AISSGSEPLH CETAETNNGH QEAKGLEVHE TCEVRRYDND QYQNRSRFQA  300
STYGANSANG AEGGSIGQQW GSHSSNKASQ RCHNVSVSTD SWSTVCHLSK KA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-18171228158NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028114277.11e-129nuclear transcription factor Y subunit A-1-like
RefseqXP_028114278.11e-129nuclear transcription factor Y subunit A-1-like
TrEMBLA0A2R6PFN50.0A0A2R6PFN5_ACTCH; Nuclear transcription factor Y subunit A-1 like
STRINGXP_010102352.11e-93(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31112248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.34e-52nuclear factor Y, subunit A1