PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn241961
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 431aa    MW: 49532.5 Da    PI: 6.0888
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn241961genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.62.4e-2198194185
    trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                 +Wt++ v++Li+++ +++++   ++           +kk++W+ vsk+m ++g+ +sp+qC++k+++lnkrykk++++ +++ ++++++  ++ +++
  Achn241961  98 KWTDNIVRLLIAVVARVGDDGTLEAaegmkrksgdlQKKGKWKTVSKVMISKGCYISPQQCEDKFNDLNKRYKKLNDILGRGtSCRVVEDPSLMESM 194
                 7************99776666632223555666788*********************************************9558888877777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-1896221No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MGHQPHNHHR HMKSPTNKMV GIENDHPIGL VGAKGTAQKG FPMNFGKGKA VTSVKIGNSN  60
HTNSSEEDEP SYDEDVNCED VTAVNRGKGK ESPWQRMKWT DNIVRLLIAV VARVGDDGTL  120
EAAEGMKRKS GDLQKKGKWK TVSKVMISKG CYISPQQCED KFNDLNKRYK KLNDILGRGT  180
SCRVVEDPSL MESMPQLSAK LKEDVRKILS SKHLFYKEMC AYHNGKKIPN CDDIDLQAHS  240
FPLMRCSKDN NGSEEEETEE NGESDDDESD NEDNNNTGGN MEQMEEHGEQ KKQDEEDGSF  300
WFQSSVLGRL EAEMADIFQD PTRSLWEQRV WITEQMLQLQ EQRVSIQAEA FELEKRRFKW  360
LRFRSKKERE LERSRLENER MMFHNERMAL QLKQKELEIG LKRPDVSLDA DSLNISRWQG  420
KDQIDLGRHQ *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028062123.10.0uncharacterized protein LOC114265508
TrEMBLA0A2R6PFN10.0A0A2R6PFN1_ACTCH; Uncharacterized protein
STRINGVIT_07s0031g02800.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129131720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.13e-62