PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn241401 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 26987.4 Da PI: 8.1407 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.4 | 5.2e-13 | 177 | 222 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+Lq Achn241401 177 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 222 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.269 | 171 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-16 | 173 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.01E-13 | 175 | 226 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.1E-15 | 176 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-13 | 177 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.1E-10 | 177 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MTTAADGICF AVSGPLSNSC HAFHRIIFCW VVGKGLKGQM DFSSGKTSSS VRMTPILENR 60 SKNSEISGPG DGSFGEGLRN DRGYVTGFPI GSWDDSAIFS DNFPIEDDDD RKTFSVMNPS 120 ENQNTEGGNR PPTVLSHHLS LPTSSAELSA MEKLLHFQDS VPCKIRAKRG FATHPRSIAE 180 RVRRTRISER MRKLQELVPN MDKQTNTADM LDLAVDYIKD LQNEVKTLLD NRARCTCSNK 240 QKQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028101125.1 | 1e-102 | transcription factor bHLH130-like isoform X1 | ||||
Refseq | XP_028101126.1 | 1e-102 | transcription factor bHLH130-like isoform X2 | ||||
Swissprot | Q66GR3 | 1e-59 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | A0A2R6PFQ0 | 1e-150 | A0A2R6PFQ0_ACTCH; Transcription factor bHLH130 like | ||||
STRING | VIT_06s0004g01740.t01 | 8e-93 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5194 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 5e-62 | bHLH family protein |
Publications ? help Back to Top | |||
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