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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn239411 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 1304aa MW: 145591 Da PI: 4.9354 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.8 | 1.1e-17 | 1065 | 1115 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++ GVr+++ +g+WvAeI+ + ++ r +lg+f+taeeAa+a+++a+ l+g Achn239411 1065 SKFVGVRQRP-SGKWVAEIKNTT---QKIRMWLGTFDTAEEAARAYDEAAFLLRG 1115 79********.7******99932...36**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48371 | 8.07E-144 | 20 | 643 | IPR016024 | Armadillo-type fold |
Gene3D | G3DSA:1.25.10.10 | 1.1E-151 | 24 | 643 | IPR011989 | Armadillo-like helical |
SMART | SM01349 | 3.9E-14 | 360 | 609 | No hit | No description |
Pfam | PF13646 | 5.4E-8 | 384 | 484 | No hit | No description |
PROSITE profile | PS50077 | 9.759 | 419 | 457 | IPR021133 | HEAT, type 2 |
CDD | cd00020 | 0.00194 | 457 | 573 | No hit | No description |
SuperFamily | SSF48371 | 8.07E-144 | 773 | 984 | IPR016024 | Armadillo-type fold |
Gene3D | G3DSA:1.25.10.10 | 1.1E-151 | 815 | 1007 | IPR011989 | Armadillo-like helical |
PROSITE profile | PS50077 | 9.028 | 869 | 901 | IPR021133 | HEAT, type 2 |
Pfam | PF02985 | 3.0E-6 | 870 | 897 | IPR000357 | HEAT repeat |
CDD | cd00018 | 1.19E-29 | 1065 | 1122 | No hit | No description |
Pfam | PF00847 | 7.3E-13 | 1065 | 1115 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-18 | 1065 | 1123 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.2E-34 | 1066 | 1130 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.875 | 1066 | 1123 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-26 | 1066 | 1123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-7 | 1067 | 1078 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-7 | 1089 | 1105 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1304 aa Download sequence Send to blast |
MDPESTQLQQ AQLAAILGPD SAPFETLISH LMSSSNEQRS QAELAFNLCK QTDPNSLALK 60 LVHTLQVSQH VEARAMSAIL LRKQLTRDDS YLWPRLSPST QSTLKSILLA CVQREEAKTI 120 IKKLCDTVSE LASGILPENG WPELLPFMFQ CVSSDSPKLQ ESAFLIFAQL SQYIGETLIP 180 HIKHLHAVFL HCLTSSPNSE VKIASLSAVI NFIQCLSNSS DRDRFQDLLP AMMTTLTEAL 240 NGGQEATAQE ALELLIELAG TEPRFLRRQL VDVVGSMLQI AEAETLEEGT RHLAIEFVIT 300 LAEARERAPG MMRKLPQFIS RLFAILMHML LDIEDDPAWH STETEDEEAG ETSNYSVGQE 360 CLDRLSIALG GNTIVPVASE QLPAYLGAPE WQKHHAALIA LAQIAEGCSK VMIKNLEQVV 420 NMVLNSFQDP HPRVRWAAIN AVGQLSTDLG PELQNQYHQR VLPALAVAMD DFQNPRVQAH 480 AASAVLNFSE NCTPDILTPY LDGIVSKLLV LLQNGKQMVQ EGALTALASV ADSSQEHFQK 540 YYDAVMPYLK AILVNATDKS NRMLRAKAME CISLVGMAVG KEKFRDDAKQ VMEVLMSLQG 600 SQMENDDPTT SYMLQAWARL CKCLGQDFLP YMSFVMPPLL LSAQLKPDVT ITSADSDNEI 660 DESDDERPCY ELSWKITMPE LLRSAKLAVE KGLAQGHNES YIKQLSDYIV PPLVEALHKV 720 ISGPLLGESQ VRSIVDEIKQ VITASSSRKR ERAERAKAED FDAEEGELLK EENEQEEEVF 780 DQVGEILGTL IKTFKASFLP FFDELSSYLT PMWGRDKTAE ERRIAICIFD DVAEQCHEAA 840 LKTFTQKMIA VLTIHPNFLY VLTRYYDTYL PFLLEACNDE NPDVRQAAVY GLGVCAEFGG 900 SVIKPLVGEA LSRLNVVIRD PNALQAENVM AYDNAVSALG KICQFHRDSI DSAQVVPAWL 960 SCLPIKSDLI EAKVVHEQLC SMVERSDREL LGPNNQYLPK IVAVFAESCL FALGGTTEET 1020 SLSGNAKGRR EWVSAMELHF QMQQKEIFSA TKQGTTRKKR ASNKSKFVGV RQRPSGKWVA 1080 EIKNTTQKIR MWLGTFDTAE EAARAYDEAA FLLRGSNTRA NFVDPGPANS PLSLKIRNLL 1140 HQKRTSKQKL TFSPTTNIAT TSKTIRTITE QNRSNNNRLV SSVLKKDTHM FDDAYKPDLS 1200 QLEISYSQFT RPFGTEFDQF LLNQSNSVLD GFEVPKLIGF APQTNSFETG VDRIPEFEHM 1260 KVERQISASL YAMNGVNEYW ENVRDSWDAF WDLPMLCQMF CPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3w3t_A | 1e-84 | 27 | 649 | 15 | 627 | Importin subunit beta-3 |
3w3w_A | 1e-84 | 27 | 649 | 15 | 627 | Importin subunit beta-3 |
3w3x_A | 1e-84 | 27 | 649 | 15 | 627 | Importin subunit beta-3 |
3w3y_A | 1e-84 | 27 | 649 | 15 | 627 | Importin subunit beta-3 |
4zj7_A | 1e-84 | 27 | 649 | 15 | 627 | Importin subunit beta-3 |
5h2v_A | 1e-84 | 27 | 649 | 15 | 627 | Importin subunit beta-3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028063240.1 | 0.0 | importin-5-like | ||||
TrEMBL | A0A2R6P8Y1 | 0.0 | A0A2R6P8Y1_ACTCH; Importin-5 like | ||||
STRING | VIT_06s0004g00500.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 3e-43 | related to AP2 11 |