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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn238601 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GATA | ||||||||
Protein Properties | Length: 185aa MW: 19750.5 Da PI: 10.3265 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.7 | 3.7e-19 | 74 | 108 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ CgttkTplWR gp g+k+LCnaCG++ rkk++ Achn238601 74 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 108 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.7E-14 | 68 | 118 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.52E-12 | 72 | 107 | No hit | No description |
CDD | cd00202 | 2.77E-13 | 73 | 134 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.7E-15 | 73 | 108 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.268 | 74 | 104 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.5E-17 | 74 | 108 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 74 | 99 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MMAVSNVPCS ASNYQQMEGR DTDTRGKAWK GVCLRSSKQA VAMMDLSDKG SESEDMNSKT 60 SDGASSVGSL VKTCADCGTT KTPLWRGGPA GPKSLCNACG IRSRKKRRAL LGLNKASGED 120 KKSKRNSDQI SARKSGKNGK LGESMKRQLL VWQRSTVENL RHKLGEEEQA AVLLMALSCG 180 SVYG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00554 | DAP | Transfer from AT5G49300 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028068252.1 | 2e-57 | GATA transcription factor 15-like | ||||
Swissprot | Q9FJ10 | 2e-40 | GAT16_ARATH; GATA transcription factor 16 | ||||
TrEMBL | A0A2R6PWZ7 | 2e-96 | A0A2R6PWZ7_ACTCH; GATA transcription factor | ||||
STRING | VIT_05s0077g01450.t01 | 1e-56 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1999 | 23 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 7e-43 | GATA transcription factor 16 |
Publications ? help Back to Top | |||
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