PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn236831
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 334aa    MW: 39072.6 Da    PI: 4.6787
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn236831genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR134.75.9e-1142135176
        FAR1   1 kfYneYAkevGF..svrkskskkskrngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkkek.dgkw 76 
                 k+Y++Y+++ GF  s+r+s++ ++ r++ +t+  fvC keg    + +k                 +k++++ ++ ++gC+a+l +k++k + kw
  Achn236831  42 KYYEDYGRQNGFwiSTRISSKGQN-RSNDVTSVLFVCEKEGMYVWKAEKdgvegndereeddkvlPKKRKKSCSTAKCGCNAHLWIKRDKwSLKW 135
                 69**********444445554444.6666************99888877899**********9988888999999*************9888888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-842135IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEESFGLDDF EVEDLKTTNN DVERLEVSSS GISFEIIEEA RKYYEDYGRQ NGFWISTRIS  60
SKGQNRSNDV TSVLFVCEKE GMYVWKAEKD GVEGNDEREE DDKVLPKKRK KSCSTAKCGC  120
NAHLWIKRDK WSLKWEDFEE RWMALIKEYG LETNEWLQQL YDIRESWVLV YNRGTFFAGM  180
NTTGRSEGVN SFFDGFIISI TNIKEFIVKY EQALKKIVKR ESDEDFESEH KFPIVNEGEF  240
LLKHAAKNYT RNVFNKFKDE ISEVFRYKVE DVGDTNRFQS FVVKSKVYEF EKFIVTLDSQ  300
TYEDIPIVHD NEIGGDESQK TRCRNVDVAS FAP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105111PKKRKKS
2106110KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020412172.18e-72protein FAR1-RELATED SEQUENCE 5 isoform X2
RefseqXP_020417036.18e-72protein FAR1-RELATED SEQUENCE 5 isoform X2
RefseqXP_021804022.14e-72protein FAR1-RELATED SEQUENCE 5-like, partial
RefseqXP_028948914.12e-71protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A251P3845e-69A0A251P384_PRUPE; Uncharacterized protein (Fragment)
TrEMBLM5X3A36e-69M5X3A3_PRUPE; Uncharacterized protein
STRINGXP_008351540.14e-71(Malus domestica)
STRINGXP_008392052.12e-72(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-29FAR1-related sequence 5