PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn236831 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 334aa MW: 39072.6 Da PI: 4.6787 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 34.7 | 5.9e-11 | 42 | 135 | 1 | 76 |
FAR1 1 kfYneYAkevGF..svrkskskkskrngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkkek.dgkw 76 k+Y++Y+++ GF s+r+s++ ++ r++ +t+ fvC keg + +k +k++++ ++ ++gC+a+l +k++k + kw Achn236831 42 KYYEDYGRQNGFwiSTRISSKGQN-RSNDVTSVLFVCEKEGMYVWKAEKdgvegndereeddkvlPKKRKKSCSTAKCGCNAHLWIKRDKwSLKW 135 69**********444445554444.6666************99888877899**********9988888999999*************9888888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-8 | 42 | 135 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MEESFGLDDF EVEDLKTTNN DVERLEVSSS GISFEIIEEA RKYYEDYGRQ NGFWISTRIS 60 SKGQNRSNDV TSVLFVCEKE GMYVWKAEKD GVEGNDEREE DDKVLPKKRK KSCSTAKCGC 120 NAHLWIKRDK WSLKWEDFEE RWMALIKEYG LETNEWLQQL YDIRESWVLV YNRGTFFAGM 180 NTTGRSEGVN SFFDGFIISI TNIKEFIVKY EQALKKIVKR ESDEDFESEH KFPIVNEGEF 240 LLKHAAKNYT RNVFNKFKDE ISEVFRYKVE DVGDTNRFQS FVVKSKVYEF EKFIVTLDSQ 300 TYEDIPIVHD NEIGGDESQK TRCRNVDVAS FAP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 111 | PKKRKKS |
2 | 106 | 110 | KKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020412172.1 | 8e-72 | protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
Refseq | XP_020417036.1 | 8e-72 | protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
Refseq | XP_021804022.1 | 4e-72 | protein FAR1-RELATED SEQUENCE 5-like, partial | ||||
Refseq | XP_028948914.1 | 2e-71 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A251P384 | 5e-69 | A0A251P384_PRUPE; Uncharacterized protein (Fragment) | ||||
TrEMBL | M5X3A3 | 6e-69 | M5X3A3_PRUPE; Uncharacterized protein | ||||
STRING | XP_008351540.1 | 4e-71 | (Malus domestica) | ||||
STRING | XP_008392052.1 | 2e-72 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 8e-29 | FAR1-related sequence 5 |