PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn235071
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 259aa    MW: 28534.2 Da    PI: 7.1382
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn235071genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.83e-18169203135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 Cs+C + kTp+WR gp g+ktLCnaCG+++++ +l
  Achn235071 169 CSHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 203
                 *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.5E-782252IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.438163199IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-14163213IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-13167201IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.75E-14167227No hitNo description
CDDcd002021.44E-13168215No hitNo description
PROSITE patternPS003440169194IPR000679Zinc finger, GATA-type
PfamPF003204.5E-16169203IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDVYGASVTE CFRVDDLLDF SNDEIFSGTA TADSDLHRLP PSGNTYESGG AHYSAQNLNQ  60
STNFTDDLCV PSDDVADLEW LSNFVDDSFT DFSASEFAGS GNHQPATPFE GRSRSKRSKA  120
TSTNKERKEN STSTNSGKKR ESSSSSSGLT GDISSPSPSE ASPMAMRRCS HCASEKTPQW  180
RTGPLGPKTL CNACGVRFKS GRLVPEYRPA ASPTFVLTQH SNSHRKVMEL RRQKEVVRQQ  240
QQQDPPRLFR RHYNFEVC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111116RSRSKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6239593e-61AB623959.1 Camellia sinensis DNA, SSR marker, MSE0297.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277959.15e-94PREDICTED: GATA transcription factor 4
SwissprotO497411e-71GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A2R6S0Y30.0A0A2R6S0Y3_ACTCH; GATA transcription factor
STRINGVIT_15s0021g02510.t012e-93(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57761935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-56GATA transcription factor 4
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]