PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn234371
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ZF-HD
Protein Properties Length: 309aa    MW: 33531.6 Da    PI: 8.5148
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn234371genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.99.2e-3260116358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                   v+Yk+ClkNhAas+G havDGCgEfmps+ ++ +++++lkCaACgCHRnFH r++e
   Achn234371  60 VVTYKKCLKNHAASMGVHAVDGCGEFMPSPAANqADPTSLKCAACGCHRNFHQRDPE 116
                  689**************************999989*******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.4E-2761115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.1E-2962114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.3863114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2063113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.54E-18186259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-29191259IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-25198255IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDISSTATAT ATACVKTPEA ESEAPTRIQV QPGKPLSFTN GVLKRHPSVH RHHVNPPPAV  60
VTYKKCLKNH AASMGVHAVD GCGEFMPSPA ANQADPTSLK CAACGCHRNF HQRDPEEPPP  120
IAPAAQNLIE YQPLHRHHPP PPPPNRVGHS SPNSASPPPI SSSYYPSAPH MLLALSGGLA  180
VPPPENNPSI TPPSSNGRKR FRTKFTQDQK EKMHEFAERL GWKMQRRDEE LIVDFCGEVG  240
VEKGVFKVWM HNNKNTLGKR DLSKENGISN ANILENTPTH LHHNHPQDFN HDSVSAHGVT  300
TNGSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-211992561875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028102760.11e-104zinc-finger homeodomain protein 9-like
SwissprotQ9LXG02e-69ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A2R6P9J40.0A0A2R6P9J4_ACTCH; Zinc-finger homeodomain protein
STRINGXP_009620291.11e-103(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.12e-54homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]