PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn232871
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family DBB
Protein Properties Length: 388aa    MW: 43335.9 Da    PI: 6.3156
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn232871genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.46.1e-08443538
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                 C+ ++e+e++ fC  ++  lC++C    H        Ht
  Achn232871  4 QCDVCNEQEASVFCPADEAALCNNCDNRVHDAnklagkHT 43
                7**************************9994466777776 PP
2zf-B_box28.82.5e-095496238
    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                e ++C+ ++e ++ lfC++++  lC++C   +H+       H+
  Achn232871 54 EYPRCDICQERRAFLFCQEDRAILCRECDIPIHRAneltqkHK 96
                679******************************7677777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.054147IPR000315B-box-type zinc finger
CDDcd000216.39E-7347No hitNo description
PfamPF006437.2E-6444IPR000315B-box-type zinc finger
SMARTSM003361.0E-9447IPR000315B-box-type zinc finger
SMARTSM003361.4E-1453100IPR000315B-box-type zinc finger
PROSITE profilePS501199.98353100IPR000315B-box-type zinc finger
PfamPF006434.4E-85496IPR000315B-box-type zinc finger
CDDcd000212.32E-1056100No hitNo description
Gene3DG3DSA:3.40.525.104.9E-22240381IPR001251CRAL-TRIO lipid binding domain
SuperFamilySSF469383.27E-7240271IPR011074CRAL/TRIO, N-terminal domain
CDDcd001706.37E-12277380No hitNo description
PfamPF006508.8E-10277382IPR001251CRAL-TRIO lipid binding domain
SuperFamilySSF520871.7E-11277381IPR001251CRAL-TRIO lipid binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MKIQCDVCNE QEASVFCPAD EAALCNNCDN RVHDANKLAG KHTRFSLFHP SLKEYPRCDI  60
CQERRAFLFC QEDRAILCRE CDIPIHRANE LTQKHKRFLL TGLKLSSSSS SSSSSSSASA  120
SSIDFDIKRS ISDQLCSPSL TDNKAIFASS TSTRIRADDA HCGRQLESSV MSASSISEYL  180
METLPGWRVD DFLDPSCSPH GFCKACDPEL PLWDQGFGSE LYAILGDSAI WVPQAQAPTA  240
KDFIVAEAFN MLRRTLKWRR EFGVDGIRDE ELDSGFGKFG GMDGEDRRGR PVWYSVFGGF  300
KNREMCKNEF GTEAKCEEFV RWKIQTMEKG VRKLGFKPGG TDSILHIVDL KNSPGPGVKE  360
LISLNKKTGA IFRENYPEII TRNVSEE*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028059320.12e-90B-box zinc finger protein 20-like
SwissprotQ0IGM77e-61BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A2R6RHF41e-151A0A2R6RHF4_ACTCH; B-box zinc finger protein
STRINGXP_006435097.14e-78(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14632364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.15e-57DBB family protein
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]