PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn232491 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 667aa MW: 75739.2 Da PI: 7.3705 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 33.3 | 1.6e-10 | 476 | 529 | 37 | 90 |
FAR1 37 kegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 keg+re++k++ +++ +etrt+C+a + v+ ++ +w+v+k+e +HnH+l+ Achn232491 476 KEGEREKDKQH-PLVKQRPEETRTDCNAFMYVSFKReLTNWVVKKFEDNHNHPLN 529 78888888887.777788899************998799**************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02401 | 2.9E-53 | 111 | 356 | IPR003451 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
TIGRFAMs | TIGR00216 | 1.4E-58 | 111 | 355 | IPR003451 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
CDD | cd13944 | 7.38E-90 | 111 | 475 | IPR003451 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
Pfam | PF02401 | 1.0E-18 | 385 | 476 | IPR003451 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
Pfam | PF03101 | 1.7E-7 | 476 | 529 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0019288 | Biological Process | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | ||||
GO:0050992 | Biological Process | dimethylallyl diphosphate biosynthetic process | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0051745 | Molecular Function | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 667 aa Download sequence Send to blast |
MISLQFCGFS TRTGRTDLSV PERRAFPFRK PLSVRCSAGE SLSPSSASVE ADPDFDAKVF 60 RKNLTRSKNY NRRGFGHKEE TLELMNREYT SDIIKTLKEN GNEYTWGNVT VKLAEAYGFC 120 WGVERAVQIA YEARKQFPQE KIWITNDIIH NPTVNKRLEE MEVQNIPIKD GKKQFDVVAK 180 DDVVVLPAFG AAVDEMLVLS DKNVQIVDTT CPWVSKVWTT VEKHKKGEYT SIIHGKYSHE 240 ETIATASFAG KYIIVKNMAE AQYVCDYILG GELDGSSSTK EAFLEKFKFA VSNGFDPESD 300 LVKVGIANQT TMLKGETEEI GKLVERTMMR RYGVENVNDH FKSFNTICDA TQKCKHKKNE 360 GKLAPSIFDI LAFMKFLLIN PPPFQERQDA MYKLVEQPLD LMLVVGGWNS SNTSHLQEIA 420 EDRGIPSYWI DSEQRIGPGN RISYKLMHGE LVEKENFIPE GPITIGVTSG ASTPDKEGER 480 EKDKQHPLVK QRPEETRTDC NAFMYVSFKR ELTNWVVKKF EDNHNHPLNL HQFIHRMPSQ 540 RKLCAVQDMN VDQADDTGMS LNASDDLVSA LAGRREFIGV TQEDQKRYLS EKIQGTCNAA 600 KQGLCRAISR SKPLKIHVFT MQYNWILMRR SLITDYGHFG DVLSFDTTFL PTKSTISCFY 660 QTTISK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3dnf_A | 2e-17 | 109 | 475 | 2 | 268 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
3dnf_B | 2e-17 | 109 | 475 | 2 | 268 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Is essential for chloroplast development. {ECO:0000269|PubMed:15659625, ECO:0000269|PubMed:15863698}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulated with a peak in the late period of dark phase and early period of the light phase. {ECO:0000269|PubMed:15863698}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF319039 | 0.0 | KF319039.1 Actinidia deliciosa 1-hydroxy-2-methyl-butenyl 4-diphosphate reductase (HDR1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028107060.1 | 0.0 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic | ||||
Swissprot | Q94B35 | 0.0 | ISPH_ARATH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic | ||||
TrEMBL | A0A2R6RHB0 | 0.0 | A0A2R6RHB0_ACTCH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | ||||
STRING | PGSC0003DMT400064783 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 8e-06 | FAR1-related sequence 5 |