PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn232391
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 361aa    MW: 42058.2 Da    PI: 9.7817
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn232391genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.82e-1316941599
                -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 l++p +f+++  ++k++    tl+ +    W++ l  rkk ++++l++GW +F + + L   +f++F+++g+  f  +v++f+ 
  Achn232391 16 ELRIPPHFMKHLVHEKAG--RATLTGPYDDLWTIVL--RKKENGTYLQDGWPDFMRYHSLGNSEFLLFQYHGSLHF--TVRIFDP 94
                689******666666555..69999***********..*******************************9886555..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-18496IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.3E-8595IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-16595IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-111693IPR003340B3 DNA binding domain
CDDcd100177.76E-131793No hitNo description
PROSITE profilePS5086311.3351795IPR003340B3 DNA binding domain
PRINTSPR009296.6E-9140150IPR017956AT hook, DNA-binding motif
SMARTSM003840.4140152IPR017956AT hook, DNA-binding motif
PfamPF021780.048141151IPR017956AT hook, DNA-binding motif
PRINTSPR009296.6E-9183194IPR017956AT hook, DNA-binding motif
PfamPF021780.007185196IPR017956AT hook, DNA-binding motif
SMARTSM003840.14185197IPR017956AT hook, DNA-binding motif
SMARTSM0038416219231IPR017956AT hook, DNA-binding motif
PfamPF021780.62222229IPR017956AT hook, DNA-binding motif
PRINTSPR009296.6E-9251261IPR017956AT hook, DNA-binding motif
PfamPF021780.0026253264IPR017956AT hook, DNA-binding motif
SMARTSM003840.085253265IPR017956AT hook, DNA-binding motif
SMARTSM00384150287299IPR017956AT hook, DNA-binding motif
PfamPF0217811291298IPR017956AT hook, DNA-binding motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDLCFYKIVL GQAIEELRIP PHFMKHLVHE KAGRATLTGP YDDLWTIVLR KKENGTYLQD  60
GWPDFMRYHS LGNSEFLLFQ YHGSLHFTVR IFDPSGLERV GSSITSKHQE AKGTQRKNKI  120
DSIDLKQLET CITENASARR RKRGRPRKYN VDPIDLCLIE AEKDQINLCR LESCKYAPDA  180
TPEEKRKRGR PRKNNVDPIA LRLIESEKDQ INLHQLESCK IRGRPRKNRE IDTLIPHQLE  240
SCKDDPEAAS SGKRKRGRPR KNIDIDTLIL HQLKFCIQDP KAASSVKWIP GRPRKKKDDD  300
LLHHSKFCKY GDGMNFPCHK HKKYHSRNIK HINEKIKEEE MEPTIRDIDS QLKDTKEEKD  360
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028102038.12e-71uncharacterized protein LOC114301285 isoform X2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.11e-14B3 family protein