PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn232391 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | B3 | ||||||||
Protein Properties | Length: 361aa MW: 42058.2 Da PI: 9.7817 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.8 | 2e-13 | 16 | 94 | 15 | 99 |
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 l++p +f+++ ++k++ tl+ + W++ l rkk ++++l++GW +F + + L +f++F+++g+ f +v++f+ Achn232391 16 ELRIPPHFMKHLVHEKAG--RATLTGPYDDLWTIVL--RKKENGTYLQDGWPDFMRYHSLGNSEFLLFQYHGSLHF--TVRIFDP 94 689******666666555..69999***********..*******************************9886555..9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.16E-18 | 4 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.3E-8 | 5 | 95 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-16 | 5 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.2E-11 | 16 | 93 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.76E-13 | 17 | 93 | No hit | No description |
PROSITE profile | PS50863 | 11.335 | 17 | 95 | IPR003340 | B3 DNA binding domain |
PRINTS | PR00929 | 6.6E-9 | 140 | 150 | IPR017956 | AT hook, DNA-binding motif |
SMART | SM00384 | 0.4 | 140 | 152 | IPR017956 | AT hook, DNA-binding motif |
Pfam | PF02178 | 0.048 | 141 | 151 | IPR017956 | AT hook, DNA-binding motif |
PRINTS | PR00929 | 6.6E-9 | 183 | 194 | IPR017956 | AT hook, DNA-binding motif |
Pfam | PF02178 | 0.007 | 185 | 196 | IPR017956 | AT hook, DNA-binding motif |
SMART | SM00384 | 0.14 | 185 | 197 | IPR017956 | AT hook, DNA-binding motif |
SMART | SM00384 | 16 | 219 | 231 | IPR017956 | AT hook, DNA-binding motif |
Pfam | PF02178 | 0.62 | 222 | 229 | IPR017956 | AT hook, DNA-binding motif |
PRINTS | PR00929 | 6.6E-9 | 251 | 261 | IPR017956 | AT hook, DNA-binding motif |
Pfam | PF02178 | 0.0026 | 253 | 264 | IPR017956 | AT hook, DNA-binding motif |
SMART | SM00384 | 0.085 | 253 | 265 | IPR017956 | AT hook, DNA-binding motif |
SMART | SM00384 | 150 | 287 | 299 | IPR017956 | AT hook, DNA-binding motif |
Pfam | PF02178 | 11 | 291 | 298 | IPR017956 | AT hook, DNA-binding motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MDLCFYKIVL GQAIEELRIP PHFMKHLVHE KAGRATLTGP YDDLWTIVLR KKENGTYLQD 60 GWPDFMRYHS LGNSEFLLFQ YHGSLHFTVR IFDPSGLERV GSSITSKHQE AKGTQRKNKI 120 DSIDLKQLET CITENASARR RKRGRPRKYN VDPIDLCLIE AEKDQINLCR LESCKYAPDA 180 TPEEKRKRGR PRKNNVDPIA LRLIESEKDQ INLHQLESCK IRGRPRKNRE IDTLIPHQLE 240 SCKDDPEAAS SGKRKRGRPR KNIDIDTLIL HQLKFCIQDP KAASSVKWIP GRPRKKKDDD 300 LLHHSKFCKY GDGMNFPCHK HKKYHSRNIK HINEKIKEEE MEPTIRDIDS QLKDTKEEKD 360 * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028102038.1 | 2e-71 | uncharacterized protein LOC114301285 isoform X2 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3779 | 22 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 1e-14 | B3 family protein |