PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn231641

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

TCP

Protein Properties

Length: 463aa MW: 48440.4 Da PI: 7.0959

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn231641	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.7	4.3e-38	70	209	2	108
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........... 88 +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl a+pai ++tgt++++a+++ ++s +ss+s+ s++ Achn231641 70 PAAKRPTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLHHAEPAIFAATGTGTIPANFStLNVSLRSSGSTISAPpsksaphsfhg 168 6789*****************************************************************999888888888884444466666777777 PP TCP 89 .......................kaaksaakskksqksaasal 108 +++++++ +++q+++++++ Achn231641 169 alalahhpyeegfshmlgfqhqlHQQQQQQ--QQQQQQQSQHQ 209 888888888888888877775432222222..22222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	26.738	76	130	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.3E-40	76	210	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MELSDVHNNN KQPNTTATAT ASSHRAVNFD SRSGAGGGAA SGAQPPQLVD ASLAIATRSE 60 QEITVAAAPP AAKRPTKDRH TKVDGRGRRI RMPATCAARV FQLTRELGHK SDGETIEWLL 120 HHAEPAIFAA TGTGTIPANF STLNVSLRSS GSTISAPPSK SAPHSFHGAL ALAHHPYEEG 180 FSHMLGFQHQ LHQQQQQQQQ QQQQQSQHQQ LLTADQIADA MPGGGDGGSN SAENYLRKRF 240 REDLFKEESQ SQQGDASAGP SSPSNKQFKG GLQLPKQQDQ AGPSSSMLRH TNMMPPGMWA 300 VAPAPSSGVG STFWMLPVTA AGGSGAGGSG QTISLAAAPT SGAGPSDQPQ VWPFAAAAPA 360 AASGVTLQAP LHFMSRSSIP GNLEFQGGRA GSLQLGSMLM QQQPSQHLGL GMPEPNLGML 420 AALSAYSRGG LNMNSEQNNP LEHHQHQPQT TDSGEDDPNS SQ*

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MELSDVHNNN KQPNTTATAT ASSHRAVNFD SRSGAGGGAA SGAQPPQLVD ASLAIATRSE  60
QEITVAAAPP AAKRPTKDRH TKVDGRGRRI RMPATCAARV FQLTRELGHK SDGETIEWLL  120
HHAEPAIFAA TGTGTIPANF STLNVSLRSS GSTISAPPSK SAPHSFHGAL ALAHHPYEEG  180
FSHMLGFQHQ LHQQQQQQQQ QQQQQSQHQQ LLTADQIADA MPGGGDGGSN SAENYLRKRF  240
REDLFKEESQ SQQGDASAGP SSPSNKQFKG GLQLPKQQDQ AGPSSSMLRH TNMMPPGMWA  300
VAPAPSSGVG STFWMLPVTA AGGSGAGGSG QTISLAAAPT SGAGPSDQPQ VWPFAAAAPA  360
AASGVTLQAP LHFMSRSSIP GNLEFQGGRA GSLQLGSMLM QQQPSQHLGL GMPEPNLGML  420
AALSAYSRGG LNMNSEQNNP LEHHQHQPQT TDSGEDDPNS SQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028088914.1	0.0	transcription factor TCP8-like
Refseq	XP_028088915.1	0.0	transcription factor TCP8-like
TrEMBL	A0A2R6Q6K7	0.0	A0A2R6Q6K7_ACTCH; Transcription factor like
STRING	EOX97160	1e-176	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11484	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	2e-76	TCP family protein