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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn231041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 209aa MW: 23769.7 Da PI: 6.0597 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.7 | 2.1e-20 | 15 | 63 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k i n+ r +tfskRr+g++KKA+ELS+LC+++va+++fs gk + + Achn231041 15 KMIVNENARRITFSKRRQGLFKKASELSTLCGVDVAIVLFSLGGKAFSF 63 5688999**********************************99987766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.151 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.1E-29 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.20E-31 | 8 | 83 | No hit | No description |
SuperFamily | SSF55455 | 4.19E-27 | 8 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-19 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.2E-23 | 17 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-19 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-19 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MEKKQTQGRK KIEMKMIVNE NARRITFSKR RQGLFKKASE LSTLCGVDVA IVLFSLGGKA 60 FSFGSPYVDS IVDRFLSHNG PSQPNEDAND TGPVVAYQEV TMRQLSQQYH ELNKRLEAEK 120 NRNRAPKSRS FDSFINELGL DQLEELKRTM VELKKNVAQQ HDKMLSDGSS KHALEQEKEE 180 EIEEVLNTEK NDGDEDDAST IPHDWLKL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 5e-16 | 8 | 87 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3kov_B | 5e-16 | 8 | 87 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3kov_I | 5e-16 | 8 | 87 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3kov_J | 5e-16 | 8 | 87 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3p57_A | 5e-16 | 8 | 87 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3p57_B | 5e-16 | 8 | 87 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3p57_C | 5e-16 | 8 | 87 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3p57_D | 5e-16 | 8 | 87 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3p57_I | 5e-16 | 8 | 87 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3p57_J | 5e-16 | 8 | 87 | 1 | 82 | Myocyte-specific enhancer factor 2A |
5f28_A | 6e-16 | 8 | 87 | 2 | 83 | MEF2C |
5f28_B | 6e-16 | 8 | 87 | 2 | 83 | MEF2C |
5f28_C | 6e-16 | 8 | 87 | 2 | 83 | MEF2C |
5f28_D | 6e-16 | 8 | 87 | 2 | 83 | MEF2C |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028099862.1 | 4e-78 | agamous-like MADS-box protein AGL62 | ||||
STRING | XP_006487057.1 | 8e-42 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 3e-31 | AGAMOUS-like 29 |