PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn230461
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family BBR-BPC
Protein Properties Length: 309aa    MW: 34472.1 Da    PI: 9.8197
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn230461genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3582e-10913081301
   GAGA_bind   1 mdddgsre..rnkg....yyepa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla 92 
                 mdd+g+re  r+k+    ++ ++ +s+k     q+m+++aerda+i+ernla+sekk a+aerdma lqrd+a+aern a++erdn++++l+++ens++
  Achn230461   1 MDDSGHREngRHKPpqgqWFMQHqPSMK-----QIMAIMAERDAAIQERNLAISEKKTAMAERDMAILQRDSAIAERNSAIMERDNAIATLQYRENSMN 94 
                 9999998888887642234445546666.....****************************************************************99 PP

   GAGA_bind  93 ....salpvgvqvlsgtksidslqqlse...pqledsavelreeeklealpieeaaeeake.kkkkkkrqrakkpkekkakkkkkksekskkkvkkesa 183
                     s +p+g+q+++g k++++ qq++e   p++++ ++  r+ +++e  p++  a e  + ++++ k+++a +p +k +++ kk ++++ ++ +k+  
  Achn230461  95 sgnmSPCPPGCQISRGMKQMHQPQQQHEhqhPHMSEASYTSRDIHTSEPSPMSPVAAEPAKpRRTRTKEANAVTPNKKPSRSSKKVKTEPADDLNKQV- 192
                 999889****************99966557799**************999988766554440444555566666777777777777777777777776. PP

   GAGA_bind 184 derskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnp 282
                    sk+++k+ dl+ln+v++D+s +PvPvCsCtG+ r CYkWG GGWqS+CCttt+S+yPLP+++++r+aRi+grKmS++af+k++++LaaeGydls+p
  Achn230461 193 -GVSKSDWKDKDLGLNEVAFDDS-MPVPVCSCTGTFRPCYKWGKGGWQSSCCTTTMSMYPLPAVPNKRHARIGGRKMSGSAFNKMISRLAAEGYDLSTP 289
                 .579*****************97.9************************************************************************** PP

   GAGA_bind 283 vDLkdhWAkHGtnkfvtir 301
                 vDLkd WAk Gtn+++ti+
  Achn230461 290 VDLKDNWAKQGTNRYITIK 308
                 ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.3E-1511308IPR010409GAGA-binding transcriptional activator
PfamPF062173.3E-961308IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDDSGHRENG RHKPPQGQWF MQHQPSMKQI MAIMAERDAA IQERNLAISE KKTAMAERDM  60
AILQRDSAIA ERNSAIMERD NAIATLQYRE NSMNSGNMSP CPPGCQISRG MKQMHQPQQQ  120
HEHQHPHMSE ASYTSRDIHT SEPSPMSPVA AEPAKPRRTR TKEANAVTPN KKPSRSSKKV  180
KTEPADDLNK QVGVSKSDWK DKDLGLNEVA FDDSMPVPVC SCTGTFRPCY KWGKGGWQSS  240
CCTTTMSMYP LPAVPNKRHA RIGGRKMSGS AFNKMISRLA AEGYDLSTPV DLKDNWAKQG  300
TNRYITIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051711.11e-176protein BASIC PENTACYSTEINE6-like
RefseqXP_028051712.11e-176protein BASIC PENTACYSTEINE6-like
RefseqXP_028051713.11e-176protein BASIC PENTACYSTEINE6-like
RefseqXP_028051715.11e-176protein BASIC PENTACYSTEINE6-like
RefseqXP_028051716.11e-176protein BASIC PENTACYSTEINE6-like
RefseqXP_028051717.11e-176protein BASIC PENTACYSTEINE6-like
RefseqXP_028051718.11e-176protein BASIC PENTACYSTEINE6-like
RefseqXP_028051719.11e-176protein BASIC PENTACYSTEINE6-like
RefseqXP_028051720.11e-176protein BASIC PENTACYSTEINE6-like
RefseqXP_028051721.11e-176protein BASIC PENTACYSTEINE6-like
SwissprotQ8L9991e-139BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A2R6PZN30.0A0A2R6PZN3_ACTCH; Protein BASIC like
STRINGXP_009803495.11e-167(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53532338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-140basic pentacysteine 6