PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn229151

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

ZF-HD

Protein Properties

Length: 303aa MW: 33009.7 Da PI: 7.9192

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn229151	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	109.7	1.6e-34	54	110	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 v+YkeClkNhAas+GghavDGCgEfmps+ ++ +++++lkCaACgCHRnFHRr+++ Achn229151 54 VVTYKECLKNHAASMGGHAVDGCGEFMPSPAANqADPTSLKCAACGCHRNFHRRDPD 110 689************************999989*****************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	5.2E-29	55	109	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.3E-31	56	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-22	57	107	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.33	57	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.97E-17	179	252	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-28	184	252	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	6.3E-25	191	247	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MDISTATVTA CVKTPEAESE APTRIQVQPG KPLCFTNGVL KRHHPHHVNS PPAVVTYKEC 60 LKNHAASMGG HAVDGCGEFM PSPAANQADP TSLKCAACGC HRNFHRRDPD DPPPLTPAAQ 120 NLIEYQPLHR HHPPPHNRVG HSSPNSASPP PISSSYYPSA PHMLLALSGG LAAAPPPENN 180 PSITPPSSNG RKRFRTKFTQ DQKDKMHEFA ERLEWKMQRR DEELISDFCG EIGVEKGVFK 240 VWMHNNKHTL GKRDSSKENG IGNANSLENT PTHNHHNHHD QNFNHDSVSA HVVATNGSSS 300 SS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	5e-19	192	249	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00387	DAP	Transfer from AT3G28920	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028102760.1	1e-104	zinc-finger homeodomain protein 9-like
Swissprot	Q9LHF0	2e-72	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A2R6RKA4	0.0	A0A2R6RKA4_ACTCH; Zinc-finger homeodomain protein
STRING	XP_010257380.1	1e-101	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1088	24	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15210.1	1e-38	homeobox protein 30

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]