PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn229061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 222aa MW: 25127.3 Da PI: 4.6499 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 37.3 | 8.4e-12 | 16 | 57 | 1 | 43 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykve 43 lppGfrFhPtdeel+++yL +kv ++ + + ++i evd++k e Achn229061 16 LPPGFRFHPTDEELITHYLSQKVIDTCFCA-RAIGEVDLNKNE 57 79**********************999888.88*****99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.68E-13 | 12 | 56 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-7 | 17 | 50 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MEKDSILNRE DEQMELPPGF RFHPTDEELI THYLSQKVID TCFCARAIGE VDLNKNEWVI 60 YRVFQKSSDG KKIHISGLMP SKMPPVMDCS VSAHAPSCFS NPTEEKPHRN DIVDSFKSPL 120 LASCSSSKAS NFSPRPIPFP DSLFSTQFLP NVGNLHYPDF QDQSILGLLL ENNEMDMKRD 180 FKSEFSPVSM DILSYHEVGQ RNYEDPINSG GPVDIDCLWN Y* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028111639.1 | 4e-45 | NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 3e-20 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A2R6RKB6 | 1e-118 | A0A2R6RKB6_ACTCH; NAC domain-containing protein | ||||
STRING | cassava4.1_025545m | 5e-56 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 2e-22 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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