PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn227371
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 670aa    MW: 75535.4 Da    PI: 9.6084
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn227371genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.4e-08133175754
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++ r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Achn227371 133 IAARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 175
                 56799*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.478126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-12128183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-13130184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-13132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-5134175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-5149180No hitNo description
CDDcd005196.60E-35372574No hitNo description
Gene3DG3DSA:3.40.50.18201.5E-33375570IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF534744.68E-27383573IPR029058Alpha/Beta hydrolase fold
PfamPF017642.8E-30436572IPR002921Fungal lipase-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006629Biological Processlipid metabolic process
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MIMMMQMDKF PDFCGPYSDV GDPIPPEFGN SNTCSGSSNY NNGNICTMPQ VMDTPNASSP  60
TFMNFPGGAA AGRWRGCGGG DFSGQGFSKR NSMVAMREMI FRIAAMQPIH IDPEAVKLPK  120
RRNVKISKDP QSIAARHRRE RISERIRILQ RLVPGGTKMD TASMLDEAIH YVKFLKTQVQ  180
SLELAAANRP AVTGIGFPVA VASGGLPSQM NKREKVKNIT QHLGLDLRDE ARLPMACKED  240
FCKDYLVLNP EHASLLDLVR ILFLSDLGER RFVESSEVNN LGGLRRRWLI FISVLLQKVL  300
IYLRKPMAWM GYVLEMWLNL LASNGGFGLL LLNFLKGSMV KPDKSLATFT SVVGNLDKRL  360
ELDKSINNGD SRYGASLSIM ASTLSYENEA FVQNVVTDHW KMEFLGLFNF WNDYQEQLST  420
QAIMFKDTTS NPNLIVVAFR GTEPFNTDQW RTDVDFSWYE LQGVGRIHGG FMKALGLQKK  480
TGWPKEIAQG LGREYAYYTI RQKLRDELNK NKKAKFILTG HSLGGALAIL FVAVLGLHEE  540
AWLLKRLDGV YTFGQPRVGD KKFGEFMKEK LRVFGAMWEE PNKNYFSLLW AIPKNLNAVW  600
ELIRSFIIPC TEGPDYKEGW FLRLMRVFGL AIPGLSAHFP PDYINATRLG SLPSQILVQD  660
LTQQCRKHD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028102981.10.0uncharacterized protein LOC114302183
TrEMBLA0A2R6Q0410.0A0A2R6Q041_ACTCH; Lipase
STRINGVIT_18s0001g10410.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.13e-41bHLH family protein