PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn226221
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 676aa    MW: 74291.4 Da    PI: 6.8937
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn226221genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.97.6e-15224258133
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                 C++C+ ++  Tp++Rrgp+g++tLCnaCGl+++ k
  Achn226221 224 CRHCRISEkaTPMMRRGPEGPRTLCNACGLMWANK 258
                 *****9999***********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.2E-1170105IPR010399Tify domain
PROSITE profilePS5132014.31970105IPR010399Tify domain
PfamPF062003.3E-1173104IPR010399Tify domain
PROSITE profilePS5101713.275148190IPR010402CCT domain
PfamPF062031.4E-15148190IPR010402CCT domain
SMARTSM004012.9E-9218273IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.57E-9219259No hitNo description
CDDcd002021.83E-9223258No hitNo description
Gene3DG3DSA:3.30.50.109.3E-13223262IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.2E-12224258IPR000679Zinc finger, GATA-type
PROSITE patternPS003440224251IPR000679Zinc finger, GATA-type
Gene3DG3DSA:1.50.10.504.4E-4295341IPR001382Glycoside hydrolase family 47
Gene3DG3DSA:1.20.1510.101.0E-14423578IPR027469Cation efflux protein transmembrane domain
SuperFamilySSF1611112.88E-16424580No hitNo description
PfamPF015458.5E-13424571IPR002524Cation efflux protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006812Biological Processcation transport
GO:0055085Biological Processtransmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004571Molecular Functionmannosyl-oligosaccharide 1,2-alpha-mannosidase activity
GO:0005509Molecular Functioncalcium ion binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0008324Molecular Functioncation transmembrane transporter activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MHMTKQAMHH HVHYMQEHDH HVLHHLSNGT GIEHDEDYDN GRGSEGMEGE APSDPGNLSD  60
NHSALVTCGS NENNDQLTLS FQGQVYVFDS VSPGKVQAVL LLLGGCEVPP SIPAITLSTH  120
RSNRLLTNEA FFNQGSSSTP LRYSVPQRLA SLIRFREKRK ERNFDKKIRY SVRKEVALRM  180
QRNKGQFTSS KPNQEDSASA ATSWDSNQSW GLDGSGSQQQ EITCRHCRIS EKATPMMRRG  240
PEGPRTLCNA CGLMWANKLK EPLMPVKLCL YVVNDSLSLL SAFTEEVFKL NEEVHRLQNR  300
MDELACFTPG MIALRASGYG PEDSRKFLSL AGEQLSSCLH CFASLCSLLG HAITSSSQHL  360
QNWLGRTISS MQDRCVSVRP WGLYHEVAGN RCDGNLSGCI QQATDDCRVG FFTRAKEIKK  420
IEVQHDHSYG YSKERFVWSL ISAVGIFCLG SGATIVHGIQ NLWTSQPPAN IQYAALVIGG  480
SFLIEGASLI VAIHAVRKGA AAEGMKVRDY VWRGHDPTSV AVMTEDGAAV TGLLIAAASL  540
VAVNTTGNAI YDPIGSIIVG NLLGMVAIFL IQRNRHALIG RAIDDHDMER VLRFLKNDPV  600
VDSVYDCKSE VIGPGFFRFK AEIDDKSHLL VAMAGEEVVT ALGSEVDRLE KEIQGIVPGI  660
RHVDIEAHNP IVPTP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-103ZIM-LIKE 2