PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn225931 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | BES1 | ||||||||
Protein Properties | Length: 363aa MW: 41024.6 Da PI: 7.609 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 60.6 | 6.8e-19 | 46 | 87 | 35 | 76 |
DUF822 35 aqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl 76 n+klpk+ DnneVlkALc+e Gwvve+DGt yrk + Achn225931 46 PTMNFKLPKHGDNNEVLKALCTEVGWVVENDGTAYRKRVLQG 87 567*********************************876444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 7.3E-17 | 48 | 86 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
SMART | SM00320 | 2.8E-7 | 87 | 127 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 1.26E-40 | 90 | 309 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 2.9E-40 | 91 | 310 | IPR015943 | WD40/YVTN repeat-like-containing domain |
Pfam | PF00400 | 1.5E-5 | 93 | 127 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 16.006 | 94 | 260 | IPR017986 | WD40-repeat-containing domain |
PROSITE profile | PS50082 | 13.55 | 94 | 136 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 114 | 128 | IPR019775 | WD40 repeat, conserved site |
Pfam | PF12894 | 1.0E-4 | 145 | 191 | IPR024977 | Anaphase-promoting complex subunit 4, WD40 domain |
SMART | SM00320 | 180 | 171 | 209 | IPR001680 | WD40 repeat |
SMART | SM00320 | 2.3E-8 | 212 | 251 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 5.1E-4 | 215 | 251 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 12.58 | 219 | 260 | IPR001680 | WD40 repeat |
SMART | SM00320 | 9.4 | 277 | 315 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010267 | Biological Process | production of ta-siRNAs involved in RNA interference | ||||
GO:0000347 | Cellular Component | THO complex | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MKTENTVNLA RSLDTCLRIG ITEKKRGKDL DYLSCSTRVE EAERRPTMNF KLPKHGDNNE 60 VLKALCTEVG WVVENDGTAY RKRVLQGKVK DIELKGHTDS VDQLCWDPKH AYLIATASGD 120 KTVCLWDARS EKCSQQAELS GENINITYKP DGTHIAVGNR DDELTILDVR KFKAIHKWKF 180 NYEVNEIAWN MRGDMFFLTT GNGTVEVLAY PSLQAVSTLT AHTAGCYCIA IDPLGRYFAV 240 GSADSLVSLW DISEMLCVRT FTKLDNYCIL KQSNVQTGRS VHQIPVRAAI NSVEWNPKYN 300 LLAYAGDDKN KYQADEVTVV SSFQQSCVDS PEMAEYLCRF QSPELRRWRA WPLVRRSGGR 360 ER* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5yzv_A | 5e-12 | 76 | 253 | 124 | 300 | Probable serine/threonine-protein kinase PkwA |
5yzv_B | 5e-12 | 76 | 253 | 124 | 300 | Probable serine/threonine-protein kinase PkwA |
5yzv_C | 5e-12 | 76 | 253 | 124 | 300 | Probable serine/threonine-protein kinase PkwA |
5yzv_D | 5e-12 | 76 | 253 | 124 | 300 | Probable serine/threonine-protein kinase PkwA |
5yzv_E | 5e-12 | 76 | 253 | 124 | 300 | Probable serine/threonine-protein kinase PkwA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as component of the THO subcomplex of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export. Contributes to the integrity of the endogenous trans-acting small interfering RNA (ta-siRNA) pathway. May process or transport a long RNA molecule so that it can be a template for secondary siRNA production. May participate in the trafficking of siRNA precursors to the ARGONAUTE catalytic center. Required for the generation of functional messenger ribonucleoproteins (mRNPs). {ECO:0000269|PubMed:20634427, ECO:0000269|PubMed:20798330}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097701.1 | 1e-146 | THO complex subunit 3 | ||||
Swissprot | Q9FKT5 | 1e-135 | THOC3_ARATH; THO complex subunit 3 | ||||
TrEMBL | A0A2R6P571 | 1e-152 | A0A2R6P571_ACTCH; THO complex subunit like | ||||
STRING | XP_010061402.1 | 1e-144 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36780.1 | 3e-13 | BES1/BZR1 homolog 2 |