PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn225931
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family BES1
Protein Properties Length: 363aa    MW: 41024.6 Da    PI: 7.609
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn225931genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF82260.66.8e-1946873576
      DUF822 35 aqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl 76
                   n+klpk+ DnneVlkALc+e Gwvve+DGt yrk   + 
  Achn225931 46 PTMNFKLPKHGDNNEVLKALCTEVGWVVENDGTAYRKRVLQG 87
                567*********************************876444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056877.3E-174886IPR008540BES1/BZR1 plant transcription factor, N-terminal
SMARTSM003202.8E-787127IPR001680WD40 repeat
SuperFamilySSF509781.26E-4090309IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.9E-4091310IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004001.5E-593127IPR001680WD40 repeat
PROSITE profilePS5029416.00694260IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.5594136IPR001680WD40 repeat
PROSITE patternPS006780114128IPR019775WD40 repeat, conserved site
PfamPF128941.0E-4145191IPR024977Anaphase-promoting complex subunit 4, WD40 domain
SMARTSM00320180171209IPR001680WD40 repeat
SMARTSM003202.3E-8212251IPR001680WD40 repeat
PfamPF004005.1E-4215251IPR001680WD40 repeat
PROSITE profilePS5008212.58219260IPR001680WD40 repeat
SMARTSM003209.4277315IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010267Biological Processproduction of ta-siRNAs involved in RNA interference
GO:0000347Cellular ComponentTHO complex
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MKTENTVNLA RSLDTCLRIG ITEKKRGKDL DYLSCSTRVE EAERRPTMNF KLPKHGDNNE  60
VLKALCTEVG WVVENDGTAY RKRVLQGKVK DIELKGHTDS VDQLCWDPKH AYLIATASGD  120
KTVCLWDARS EKCSQQAELS GENINITYKP DGTHIAVGNR DDELTILDVR KFKAIHKWKF  180
NYEVNEIAWN MRGDMFFLTT GNGTVEVLAY PSLQAVSTLT AHTAGCYCIA IDPLGRYFAV  240
GSADSLVSLW DISEMLCVRT FTKLDNYCIL KQSNVQTGRS VHQIPVRAAI NSVEWNPKYN  300
LLAYAGDDKN KYQADEVTVV SSFQQSCVDS PEMAEYLCRF QSPELRRWRA WPLVRRSGGR  360
ER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzv_A5e-1276253124300Probable serine/threonine-protein kinase PkwA
5yzv_B5e-1276253124300Probable serine/threonine-protein kinase PkwA
5yzv_C5e-1276253124300Probable serine/threonine-protein kinase PkwA
5yzv_D5e-1276253124300Probable serine/threonine-protein kinase PkwA
5yzv_E5e-1276253124300Probable serine/threonine-protein kinase PkwA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as component of the THO subcomplex of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export. Contributes to the integrity of the endogenous trans-acting small interfering RNA (ta-siRNA) pathway. May process or transport a long RNA molecule so that it can be a template for secondary siRNA production. May participate in the trafficking of siRNA precursors to the ARGONAUTE catalytic center. Required for the generation of functional messenger ribonucleoproteins (mRNPs). {ECO:0000269|PubMed:20634427, ECO:0000269|PubMed:20798330}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097701.11e-146THO complex subunit 3
SwissprotQ9FKT51e-135THOC3_ARATH; THO complex subunit 3
TrEMBLA0A2R6P5711e-152A0A2R6P571_ACTCH; THO complex subunit like
STRINGXP_010061402.11e-144(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36780.13e-13BES1/BZR1 homolog 2
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Zhang Y, et al.
    Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes.
    Plant Cell, 2008. 20(6): p. 1437-55
    [PMID:18552200]
  3. Yelina NE, et al.
    Putative Arabidopsis THO/TREX mRNA export complex is involved in transgene and endogenous siRNA biosynthesis.
    Proc. Natl. Acad. Sci. U.S.A., 2010. 107(31): p. 13948-53
    [PMID:20634427]
  4. Jauvion V,Elmayan T,Vaucheret H
    The conserved RNA trafficking proteins HPR1 and TEX1 are involved in the production of endogenous and exogenous small interfering RNA in Arabidopsis.
    Plant Cell, 2010. 22(8): p. 2697-709
    [PMID:20798330]
  5. Tao S, et al.
    The THO/TREX Complex Active in miRNA Biogenesis Negatively Regulates Root-Associated Acid Phosphatase Activity Induced by Phosphate Starvation.
    Plant Physiol., 2016. 171(4): p. 2841-53
    [PMID:27329222]
  6. Sørensen BB, et al.
    The Arabidopsis THO/TREX component TEX1 functionally interacts with MOS11 and modulates mRNA export and alternative splicing events.
    Plant Mol. Biol., 2017. 93(3): p. 283-298
    [PMID:28004241]
  7. Su Z, et al.
    The THO Complex Non-Cell-Autonomously Represses Female Germline Specification through the TAS3-ARF3 Module.
    Curr. Biol., 2017. 27(11): p. 1597-1609.e2
    [PMID:28552357]