PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn222061
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 325aa    MW: 35175 Da    PI: 5.4662
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn222061genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.43.1e-16224260135
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Achn222061 224 CQHCGVSEnsTPAMRRGPAGPRTLCNACGLMWANKGT 260
                 **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009797.1E-666101IPR010399Tify domain
PROSITE profilePS5132012.38766101IPR010399Tify domain
PfamPF062001.1E-869100IPR010399Tify domain
PfamPF062032.2E-14134176IPR010402CCT domain
PROSITE profilePS5101712.57134176IPR010402CCT domain
PROSITE profilePS501148.906218264IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-11218271IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.85E-11221270No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14222265IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.07E-15223267No hitNo description
PfamPF003203.9E-14224260IPR000679Zinc finger, GATA-type
PROSITE patternPS003440224251IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MKAANPRPLQ ACPYEDHHLR FPATQNDDDG EFEEDFDGGD DEAEEGAQVT SLNASNHRLG  60
SSGVVVASRT SELTLAFEGE VYVFPAITPE KVQAVLLLLG GSEIPTGVPT IDVPFDSNNQ  120
GGDGNPKRSN LSRRIASLVR FREKRKERCF DKKIRYNVRK EAAQRMHRKN GQFASMKESS  180
APSSWDSTKN GLQGDGTPRP ETVDHHTIAV SVFDSAMFSS ARRCQHCGVS ENSTPAMRRG  240
PAGPRTLCNA CGLMWANKGT LRDLNKGGRI PCLDQVETGT PEDPPKAVAR GTGNSSVNPD  300
EVETLVELAN TSETEMDIPA SFVS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4773291e-33AM477329.2 Vitis vinifera contig VV78X060343.1, whole genome shotgun sequence.
GenBankAM4886711e-33AM488671.2 Vitis vinifera contig VV78X090115.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010664425.11e-141PREDICTED: GATA transcription factor 24 isoform X2
SwissprotQ8GXL71e-65GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2R6R3640.0A0A2R6R364_ACTCH; GATA transcription factor
STRINGVIT_18s0001g07730.t011e-138(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-67ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]