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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn222051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GATA | ||||||||
Protein Properties | Length: 217aa MW: 23577 Da PI: 6.2661 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 48.2 | 1.5e-15 | 165 | 199 | 1 | 33 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 C++Cg ++ Tp++Rrgp g++tLCnaCGl+++ k Achn222051 165 CTHCGISSksTPMMRRGPGGPRTLCNACGLFWANK 199 *****99999**********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 10.187 | 59 | 94 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.4E-7 | 63 | 84 | IPR010399 | Tify domain |
Pfam | PF06203 | 9.3E-17 | 97 | 139 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.63 | 97 | 139 | IPR010402 | CCT domain |
SuperFamily | SSF57716 | 2.66E-10 | 158 | 200 | No hit | No description |
SMART | SM00401 | 1.5E-10 | 159 | 212 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.8E-13 | 164 | 199 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 165 | 192 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.43E-11 | 165 | 199 | No hit | No description |
Pfam | PF00320 | 4.2E-13 | 165 | 200 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MYGHTQSMNV SDQFAAAAAA AEEDSSAGGD DSVGNDGVEV VPPDAVYGDS VGPEAPLQRS 60 DCSNQLTLSF RGQVFVFDDV TTDKELDYPT RCSQPQRAAS LNRFRQKRKE RCFDKKIRYN 120 VRQEVALRMQ RNKGQFTSSK KSEGAARWST AEDSAQEDTP PETLCTHCGI SSKSTPMMRR 180 GPGGPRTLCN ACGLFWANKS EGVAYNSDYG TPIGTH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028061947.1 | 1e-101 | GATA transcription factor 25-like isoform X1 | ||||
Swissprot | Q9LRH6 | 1e-67 | GAT25_ARATH; GATA transcription factor 25 | ||||
TrEMBL | A0A2R6R370 | 1e-139 | A0A2R6R370_ACTCH; GATA transcription factor | ||||
STRING | VIT_18s0001g07720.t01 | 3e-82 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14030 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.3 | 2e-66 | GATA-type zinc finger protein with TIFY domain |
Publications ? help Back to Top | |||
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