PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn220811 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GATA | ||||||||
Protein Properties | Length: 255aa MW: 28144.8 Da PI: 8.4844 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.3 | 7.7e-17 | 187 | 221 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C + Tp+WR gp g+ktLCnaCG++y++ +l Achn220811 187 CSHCLAQRTPQWRTGPMGPKTLCNACGVRYKSGRL 221 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 1.3E-14 | 180 | 218 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.4 | 181 | 217 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.5E-16 | 181 | 235 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.57E-15 | 182 | 244 | No hit | No description |
CDD | cd00202 | 7.57E-12 | 186 | 233 | No hit | No description |
Pfam | PF00320 | 1.3E-14 | 187 | 221 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 187 | 212 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDLCVSSEYQ PEQQLLSPPS RSKLGTLDDL FSTHNNLQEG DEDSSLEWLS IFVEDCFSSS 60 GSCLPPPPTP NTAPQTLKSE KVQPHQSTAG GVSVHEFVVP GRARSKRRRP GPITKSKTQL 120 GPLAQISPDP PLLHQAYWLA DSELILPKKE DEKEEAEGEK VEEVKRGRGN LGMEVQVGIQ 180 QGQGRRCSHC LAQRTPQWRT GPMGPKTLCN ACGVRYKSGR LLPEYRPAKS PTFVSYKHSN 240 SHKKVLEMRS MSNS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017241021.1 | 2e-84 | PREDICTED: GATA transcription factor 5-like | ||||
Refseq | XP_023745112.1 | 1e-84 | GATA transcription factor 9-like | ||||
TrEMBL | A0A2R6P2T0 | 0.0 | A0A2R6P2T0_ACTCH; GATA transcription factor | ||||
STRING | EOY11203 | 2e-81 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15155 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36240.1 | 5e-37 | GATA transcription factor 7 |