PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn220151 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | WOX | ||||||||
Protein Properties | Length: 360aa MW: 39501.4 Da PI: 8.0003 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.4 | 1e-17 | 54 | 113 | 2 | 56 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 ++R+++++eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k Achn220151 54 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRTQLqeygQVGDANVFYWFQNRKSRTK 113 89*****************99*************************************99 PP | |||||||
2 | Wus_type_Homeobox | 110.8 | 7.5e-36 | 53 | 116 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi+iLe++++sG+++P+++ei++i+++L+eyG+++d+NVfyWFQNrk+R ++kq Achn220151 53 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRTQLQEYGQVGDANVFYWFQNRKSRTKHKQ 116 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-7 | 39 | 113 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.25E-12 | 48 | 119 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.382 | 50 | 115 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-8 | 52 | 119 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.67E-8 | 53 | 116 | No hit | No description |
Pfam | PF00046 | 3.0E-15 | 54 | 114 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MASSNRHWPS MFKSKPCNHH PWQHDINPNS PLVSSACHRT PYSSGSEERT PEPKPRWNPK 60 PEQIRILEAI FNSGMVNPPR DEIRKIRTQL QEYGQVGDAN VFYWFQNRKS RTKHKQQRHL 120 QTNKHHHPQQ PITTSATSSS SSSEKPSLSP PKASSIVDVA NSPTASVNQT YFSGGPAASE 180 FALDGFFFPA GFGLPEDDQA AVGGGPGVLL SELMMVSGQG GHAQKKVEEE KLLKLQQQQM 240 ISTFGVAAPT VPSAITQILG ACVGEPCPVG PQKSTVFIND VAFEVGVGPF NVREAFGDDA 300 VLVHCSGQPV VTNEWGVTLH SLQHGGFYYL LRTLTPITTA PQTPQLIWYF DHPHFSYIK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Homeodomain transcription factor required for meristem growth and early development (PubMed:15753038). Promotes cell proliferation and prevents premature differentiation in meristematic tissues during postembryonic development (PubMed:15753038). Essential for maintaining tissue growth during embryogenesis (PubMed:17706632). May act by repressing TSS to promote meristematic proliferation (PubMed:21185286). Involved in the transcriptional activation of a subset of cytokinin response factors (PubMed:20110319). May act as a negative regulator of cytokinin signaling in the dark (PubMed:21057190). {ECO:0000269|PubMed:15753038, ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:20110319, ECO:0000269|PubMed:21057190, ECO:0000303|PubMed:21185286}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2. {ECO:0000269|PubMed:21316593}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002273188.1 | 1e-127 | PREDICTED: WUSCHEL-related homeobox 9 | ||||
Swissprot | Q6X7J4 | 6e-82 | WOX9_ARATH; WUSCHEL-related homeobox 9 | ||||
TrEMBL | A0A2R6QLB4 | 0.0 | A0A2R6QLB4_ACTCH; WUSCHEL-related homeobox like (Fragment) | ||||
STRING | VIT_10s0003g00560.t01 | 1e-125 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5942 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 3e-61 | homeobox-3 |
Publications ? help Back to Top | |||
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