PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn219251

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 333aa MW: 38079.9 Da PI: 9.9104

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn219251	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.2	3.1e-29	14	110	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 aCa+Ck++r+kC+k+Cvlap+fp +k+f+ vhklFG sn++k+++++ ++++++s ++eA + +dP +G +g++++l q+ + l++ + l Achn219251 14 ACASCKHQRKKCPKKCVLAPHFPPGLEKEFEQVHKLFGISNMTKMIRKTAFPLQKEMVKSFIWEASLWRQDPDHGPLGFYNRLDQRNNFLEQRNNFL 110 7************************************************************************************999988876655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.985	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.0E-27	14	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MSSDDERRSS LRPACASCKH QRKKCPKKCV LAPHFPPGLE KEFEQVHKLF GISNMTKMIR 60 KTAFPLQKEM VKSFIWEASL WRQDPDHGPL GFYNRLDQRN NFLEQRNNFL ERERELYLRN 120 QMVQLPMAQL PYSSNNGFWT VPYYNGQSLF QANPATLDTH GNISSSSSQR GVHGLDRLIQ 180 EQARQSNGRD GSIPHFYHPN FVQEQNYQPL FQGPEIDYLI RGGFAHTSNA EFLERGERAS 240 VGGHNGQFEA PHSSPLQRQE STIQNNNINP GLSNLSFPTS TIYRLSLRNL NRKNILLQTK 300 CKPQLCSSDM KQRRALLTNR SCVAQSSAFH SP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-15	15	128	12	125	LOB family transfactor Ramosa2.1
5ly0_B	3e-15	15	128	12	125	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6QLB3	0.0	A0A2R6QLB3_ACTCH; LOB domain-containing protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10177	18	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	8e-24	LOB domain-containing protein 2