PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn219251 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | LBD | ||||||||
Protein Properties | Length: 333aa MW: 38079.9 Da PI: 9.9104 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.2 | 3.1e-29 | 14 | 110 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 aCa+Ck++r+kC+k+Cvlap+fp +k+f+ vhklFG sn++k+++++ ++++++s ++eA + +dP +G +g++++l q+ + l++ + l Achn219251 14 ACASCKHQRKKCPKKCVLAPHFPPGLEKEFEQVHKLFGISNMTKMIRKTAFPLQKEMVKSFIWEASLWRQDPDHGPLGFYNRLDQRNNFLEQRNNFL 110 7************************************************************************************999988876655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.985 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.0E-27 | 14 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MSSDDERRSS LRPACASCKH QRKKCPKKCV LAPHFPPGLE KEFEQVHKLF GISNMTKMIR 60 KTAFPLQKEM VKSFIWEASL WRQDPDHGPL GFYNRLDQRN NFLEQRNNFL ERERELYLRN 120 QMVQLPMAQL PYSSNNGFWT VPYYNGQSLF QANPATLDTH GNISSSSSQR GVHGLDRLIQ 180 EQARQSNGRD GSIPHFYHPN FVQEQNYQPL FQGPEIDYLI RGGFAHTSNA EFLERGERAS 240 VGGHNGQFEA PHSSPLQRQE STIQNNNINP GLSNLSFPTS TIYRLSLRNL NRKNILLQTK 300 CKPQLCSSDM KQRRALLTNR SCVAQSSAFH SP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-15 | 15 | 128 | 12 | 125 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-15 | 15 | 128 | 12 | 125 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6QLB3 | 0.0 | A0A2R6QLB3_ACTCH; LOB domain-containing protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10177 | 18 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 8e-24 | LOB domain-containing protein 2 |