PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn219211
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 383aa    MW: 43159.7 Da    PI: 7.9412
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn219211genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.86.5e-341412811128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgy 82 
                 lp+G++F+Ptd+e++ e+L++kv+++       +   +    +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      + +
  Achn219211 141 LPAGVKFDPTDQEIL-EHLEAKVSRDArkihplI---DefipTLEGEnGICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHtdmdggETR 234
                 799***********9.99*****99995554332...132222333336**********.555666777******************744456655778 PP

         NAM  83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                 W++tgk+++v++ +g+l+g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Achn219211 235 WHKTGKTRPVIT-NGALKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 281
                 ************.999***********6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-38136300IPR003441NAC domain
PROSITE profilePS5100533.892141300IPR003441NAC domain
PfamPF023653.1E-15142281IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MSFEMESMGC ILTKLIKNKK IGLGTQSAAC QGKEEKSIPS QTSSTVETRR FCYPKKCMFE  60
EVEETGERNS VWDGHKSKSR DMAWCNDSED QSANQIISIN SKENRVIDEK ADETRIIICP  120
SCGHNIEILQ DQGGIQDLPG LPAGVKFDPT DQEILEHLEA KVSRDARKIH PLIDEFIPTL  180
EGENGICYTH PEKLPGVSKD GQIRHFFHRP SKAYTTGTRK RRKVHTDMDG GETRWHKTGK  240
TRPVITNGAL KGFKKILVLY TNYGRQKKPE KTNWVMHQYH LGDNEEEREG ELVVSKVFYQ  300
TQPRQCGSSG KDLLDQKPRG QSGQASNYVD PCYHFPLISY EIGGQNRENP PQLIPNLVLQ  360
GDGSSFIDLH TNASKGKVLE RK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-1214128115140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00165DAPTransfer from AT1G28470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010655461.11e-167PREDICTED: NAC domain-containing protein 73 isoform X1
SwissprotF4HY611e-120NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A2R6QLC60.0A0A2R6QLC6_ACTCH; NAC domain-containing protein
STRINGEOY281521e-157(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.11e-123NAC domain containing protein 10