PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn219111
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 732aa    MW: 82845.6 Da    PI: 5.2422
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn219111genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.82e-101561248
         NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
                 pG+rF P++e+lv++yL++k ++++   + vi+e+d+y++ P +L 
  Achn219111 15 SPGCRFYPSEEQLVCYYLTHKNNDNRRFSFYVINEIDLYNYIPCNLL 61
                79*******************99999666699************995 PP
2NAM32.91.9e-1092138248
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 
                  pG+rF P++e+lv++yL++k ++++   + vi+e+d+y++ P +L 
  Achn219111  92 SPGCRFYPSEEQLVCYYLTHKNNDNRRFSFYVINEIDLYNYIPCNLL 138
                 79*******************99999666699************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-10966IPR003441NAC domain
SuperFamilySSF1019413.79E-1085143IPR003441NAC domain
HamapMF_0300367.138162694IPR007783Eukaryotic translation initiation factor 3 subunit D
PfamPF050913.6E-196166682IPR007783Eukaryotic translation initiation factor 3 subunit D
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005852Cellular Componenteukaryotic translation initiation factor 3 complex
GO:0003677Molecular FunctionDNA binding
GO:0003743Molecular Functiontranslation initiation factor activity
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MGDPSNPKLS LISMSPGCRF YPSEEQLVCY YLTHKNNDNR RFSFYVINEI DLYNYIPCNL  60
LDTACFGLAA KGGSGTDMGD PSNPKLSLIS MSPGCRFYPS EEQLVCYYLT HKNNDNRRFS  120
FYVINEIDLY NYIPCNLLDT ACFGLVAKGG SGTDTATSKT MVGFDVGTVP FNSDGWGPPE  180
SSSHLLPNHP SNVPFAPFSR SDKLGRIADW TRNFNNQNRN PSNPRYPSDS VFDFAGDESF  240
GGAAGDEDSS FRLVDGRPPP RPKFGPRWRF QHHHNQRSHL PQRRDEEVEA KRRDAEKERA  300
RRDRLYHLNR SGGNAPRREA AAFKSSVDIQ PEWNMLDQIP FSTFTKLSFS VPEPEDLLLC  360
GALEFYDRTY DRITPKNSKP LERFKNRNFF KVTTTDDPVI RRLANEDKAT VFATDSILST  420
LMCAPRSVYS WDIVIQRVGN KLFFDKRDGS QLDLLSVHET SQEPLPEAKD DINSAYSLSV  480
EAAYINQNFS QQVLIRDGNK VGFEEGNPFA NEGEEVASVA YRYRRWKLDD EMYLVARCEV  540
QSVAEVNNQR SFLTLNALNE FDPKYSGVDW RQKLETQRGA VLATELKNNA NKLAKWTSQA  600
LLASADMMKL GYVSRVHPRD HFNHVILAVV GYKPKDFAAQ INLNTSNMWG IVKSIVDLCM  660
KLNEGKYVLV KDPSKPQVRI YEVPADAFEN DYMEEPLPEE EQVQPPAEDV EGGEAIATTN  720
DVEDKEISNE A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5k4b_A1e-1363256882368Eukaryotic translation initiation factor 3 subunit D
5k4b_B1e-1363256882368Eukaryotic translation initiation factor 3 subunit D
5k4c_A1e-1363256882368Eukaryotic translation initiation factor 3 subunit D
5k4d_A1e-1363256882368Eukaryotic translation initiation factor 3 subunit D
5k4d_B1e-1363256882368Eukaryotic translation initiation factor 3 subunit D
6fec_91e-1363256882368EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT D
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtmRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7-methylguanosine cap of a subset of mRNAs. {ECO:0000255|HAMAP-Rule:MF_03003}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028071401.10.0eukaryotic translation initiation factor 3 subunit D-like
SwissprotP568200.0EIF3D_ARATH; Eukaryotic translation initiation factor 3 subunit D
TrEMBLA0A2R6QLF60.0A0A2R6QLF6_ACTCH; Eukaryotic translation initiation factor 3 subunit D
STRINGVIT_00s0880g00020.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.22e-08NAC family protein
Publications ? help Back to Top
  1. Burks EA,Bezerra PP,Le H,Gallie DR,Browning KS
    Plant initiation factor 3 subunit composition resembles mammalian initiation factor 3 and has a novel subunit.
    J. Biol. Chem., 2001. 276(3): p. 2122-31
    [PMID:11042177]
  2. Kubis S, et al.
    The Arabidopsis ppi1 mutant is specifically defective in the expression, chloroplast import, and accumulation of photosynthetic proteins.
    Plant Cell, 2003. 15(8): p. 1859-71
    [PMID:12897258]