PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn219111 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 732aa MW: 82845.6 Da PI: 5.2422 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 32.8 | 2e-10 | 15 | 61 | 2 | 48 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 pG+rF P++e+lv++yL++k ++++ + vi+e+d+y++ P +L Achn219111 15 SPGCRFYPSEEQLVCYYLTHKNNDNRRFSFYVINEIDLYNYIPCNLL 61 79*******************99999666699************995 PP | |||||||
2 | NAM | 32.9 | 1.9e-10 | 92 | 138 | 2 | 48 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 pG+rF P++e+lv++yL++k ++++ + vi+e+d+y++ P +L Achn219111 92 SPGCRFYPSEEQLVCYYLTHKNNDNRRFSFYVINEIDLYNYIPCNLL 138 79*******************99999666699************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-10 | 9 | 66 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.79E-10 | 85 | 143 | IPR003441 | NAC domain |
Hamap | MF_03003 | 67.138 | 162 | 694 | IPR007783 | Eukaryotic translation initiation factor 3 subunit D |
Pfam | PF05091 | 3.6E-196 | 166 | 682 | IPR007783 | Eukaryotic translation initiation factor 3 subunit D |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005852 | Cellular Component | eukaryotic translation initiation factor 3 complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003743 | Molecular Function | translation initiation factor activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 732 aa Download sequence Send to blast |
MGDPSNPKLS LISMSPGCRF YPSEEQLVCY YLTHKNNDNR RFSFYVINEI DLYNYIPCNL 60 LDTACFGLAA KGGSGTDMGD PSNPKLSLIS MSPGCRFYPS EEQLVCYYLT HKNNDNRRFS 120 FYVINEIDLY NYIPCNLLDT ACFGLVAKGG SGTDTATSKT MVGFDVGTVP FNSDGWGPPE 180 SSSHLLPNHP SNVPFAPFSR SDKLGRIADW TRNFNNQNRN PSNPRYPSDS VFDFAGDESF 240 GGAAGDEDSS FRLVDGRPPP RPKFGPRWRF QHHHNQRSHL PQRRDEEVEA KRRDAEKERA 300 RRDRLYHLNR SGGNAPRREA AAFKSSVDIQ PEWNMLDQIP FSTFTKLSFS VPEPEDLLLC 360 GALEFYDRTY DRITPKNSKP LERFKNRNFF KVTTTDDPVI RRLANEDKAT VFATDSILST 420 LMCAPRSVYS WDIVIQRVGN KLFFDKRDGS QLDLLSVHET SQEPLPEAKD DINSAYSLSV 480 EAAYINQNFS QQVLIRDGNK VGFEEGNPFA NEGEEVASVA YRYRRWKLDD EMYLVARCEV 540 QSVAEVNNQR SFLTLNALNE FDPKYSGVDW RQKLETQRGA VLATELKNNA NKLAKWTSQA 600 LLASADMMKL GYVSRVHPRD HFNHVILAVV GYKPKDFAAQ INLNTSNMWG IVKSIVDLCM 660 KLNEGKYVLV KDPSKPQVRI YEVPADAFEN DYMEEPLPEE EQVQPPAEDV EGGEAIATTN 720 DVEDKEISNE A* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5k4b_A | 1e-136 | 325 | 688 | 2 | 368 | Eukaryotic translation initiation factor 3 subunit D |
5k4b_B | 1e-136 | 325 | 688 | 2 | 368 | Eukaryotic translation initiation factor 3 subunit D |
5k4c_A | 1e-136 | 325 | 688 | 2 | 368 | Eukaryotic translation initiation factor 3 subunit D |
5k4d_A | 1e-136 | 325 | 688 | 2 | 368 | Eukaryotic translation initiation factor 3 subunit D |
5k4d_B | 1e-136 | 325 | 688 | 2 | 368 | Eukaryotic translation initiation factor 3 subunit D |
6fec_9 | 1e-136 | 325 | 688 | 2 | 368 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT D |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7-methylguanosine cap of a subset of mRNAs. {ECO:0000255|HAMAP-Rule:MF_03003}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028071401.1 | 0.0 | eukaryotic translation initiation factor 3 subunit D-like | ||||
Swissprot | P56820 | 0.0 | EIF3D_ARATH; Eukaryotic translation initiation factor 3 subunit D | ||||
TrEMBL | A0A2R6QLF6 | 0.0 | A0A2R6QLF6_ACTCH; Eukaryotic translation initiation factor 3 subunit D | ||||
STRING | VIT_00s0880g00020.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G27410.2 | 2e-08 | NAC family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|