PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn217751

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 281aa MW: 31793 Da PI: 7.0191

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn217751	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.7	0.00012	36	85	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 +r ++erE+ R+++N+ f L l ++ +K + Ka+iL ++++++k++ Achn217751 36 KRIHKSEREKLKREHLNELFLALVNSLGPS-----QKnNGKASILGETTRFLKEM 85 68899*************9987766655.....66599*********9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.11E-6	33	90	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.9E-8	33	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.033	35	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.02E-11	35	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MDDEVRKMGF KGWSVCSLQR QWWSHSSKKN QGKIPKRIHK SEREKLKREH LNELFLALVN 60 SLGPSQKNNG KASILGETTR FLKEMHAQIE CLKKEHAALL SESQYVTIEK NELQDENSAL 120 EAQIGKLRIE IDERVVHSKP DLNVPPQEEP TSHFPVEPVI QQAPYVNPVY IIPVRSDLSA 180 YPEPDATQLA PRPTSNKLKT LNNLSSSSFC KQFSDQKQPT SSETKSELWD LEPEPSSRPV 240 VSLVYPLLIR KQSTEVAITV TATDTDLHQL HYVFAADQFG *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028096797.1	3e-83	transcription factor bHLH47-like
Swissprot	Q9SN74	2e-43	BH047_ARATH; Transcription factor bHLH47
TrEMBL	A0A2R6PE62	1e-121	A0A2R6PE62_ACTCH; Transcription factor bHLH47 like
STRING	XP_006476617.1	6e-58	(Citrus sinensis)
STRING	EOY21806	5e-58	(Theobroma cacao)
STRING	XP_006439610.1	4e-58	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4307	19	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	7e-46	bHLH family protein

Publications ? help Back to Top
Rodríguez-Celma J, et al. The transcriptional response of Arabidopsis leaves to Fe deficiency. Front Plant Sci, 2013. 4: p. 276 [PMID:23888164] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Martínez-Trujillo M, et al. Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana. Plant Mol. Biol., 2014. 86(1-2): p. 35-50 [PMID:24928490] Li H,Wang L,Yang ZM Co-expression analysis reveals a group of genes potentially involved in regulation of plant response to iron-deficiency. Gene, 2015. 554(1): p. 16-24 [PMID:25300251] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]