PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn217751 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 281aa MW: 31793 Da PI: 7.0191 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.7 | 0.00012 | 36 | 85 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 +r ++erE+ R+++N+ f L l ++ +K + Ka+iL ++++++k++ Achn217751 36 KRIHKSEREKLKREHLNELFLALVNSLGPS-----QKnNGKASILGETTRFLKEM 85 68899***************9987766655.....66599***********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 8.11E-6 | 33 | 90 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.9E-8 | 33 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.033 | 35 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.02E-11 | 35 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MDDEVRKMGF KGWSVCSLQR QWWSHSSKKN QGKIPKRIHK SEREKLKREH LNELFLALVN 60 SLGPSQKNNG KASILGETTR FLKEMHAQIE CLKKEHAALL SESQYVTIEK NELQDENSAL 120 EAQIGKLRIE IDERVVHSKP DLNVPPQEEP TSHFPVEPVI QQAPYVNPVY IIPVRSDLSA 180 YPEPDATQLA PRPTSNKLKT LNNLSSSSFC KQFSDQKQPT SSETKSELWD LEPEPSSRPV 240 VSLVYPLLIR KQSTEVAITV TATDTDLHQL HYVFAADQFG * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028096797.1 | 3e-83 | transcription factor bHLH47-like | ||||
Swissprot | Q9SN74 | 2e-43 | BH047_ARATH; Transcription factor bHLH47 | ||||
TrEMBL | A0A2R6PE62 | 1e-121 | A0A2R6PE62_ACTCH; Transcription factor bHLH47 like | ||||
STRING | XP_006476617.1 | 6e-58 | (Citrus sinensis) | ||||
STRING | EOY21806 | 5e-58 | (Theobroma cacao) | ||||
STRING | XP_006439610.1 | 4e-58 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4307 | 19 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 7e-46 | bHLH family protein |