PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn216441
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 324aa    MW: 35194.9 Da    PI: 5.9948
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn216441genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.18.8e-17220254135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C +C + kTp+WR gp g+ktLCnaCG+++++ +l
  Achn216441 220 CLHCASEKTPQWRTGPMGPKTLCNACGVRFKSGRL 254
                 99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.6E-8223305IPR016679Transcription factor, GATA, plant
Gene3DG3DSA:3.30.50.101.1E-13214251IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.321214250IPR000679Zinc finger, GATA-type
SMARTSM004013.3E-16214264IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-14216277No hitNo description
CDDcd002021.95E-13219266No hitNo description
PfamPF003201.3E-14220254IPR000679Zinc finger, GATA-type
PROSITE patternPS003440220245IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEANRFFADG LFGAAGEGYF SQGNRYFEKK SAEIVNNHFA IDDLLDFSKE DDVMTDAVFD  60
NVNGNSTDSS TVTAVDSCNS SVSGGEHQFS GNISCRSFAD AQFAGEGELC VPYDDLAELE  120
WLSNFVEDSF SSDDLNNLQL ISAPNAALNT SSSPRAHAPI FITDVSVPGK ARSKRSRAAP  180
CDWSSRLLLL SPSDPTTDAT ASKTAPPKKR DAAETPGRKC LHCASEKTPQ WRTGPMGPKT  240
LCNACGVRFK SGRLVPEYRP AASPTFVSAR HSNSHRKVLE MRRQKEIQRQ HEFLSQSSVF  300
AVSNGDDYLI HHQGGGPDYS HVI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628152.11e-143PREDICTED: GATA transcription factor 12-like
SwissprotO826323e-79GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A2R6QFK70.0A0A2R6QFK7_ACTCH; GATA transcription factor
STRINGXP_009628152.11e-143(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.17e-78GATA transcription factor 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]