PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn215981

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 854aa MW: 91470.2 Da PI: 6.6277

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn215981	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.4	0.00014	411	431	35	55
TS-STCHHHHHHHHHHHHHHH CS HLH 35 skKlsKaeiLekAveYIksLq 55 s++++Ka++L +A+eY+k Lq Achn215981 411 SERVDKASMLDEAIEYLKTLQ 431 7899****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	7.0E-5	410	439	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.13E-4	411	435	No hit	No description
SuperFamily	SSF47459	2.49E-6	411	455	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 854 aa Download sequence Send to blast
MMQGQSSRPR RNSTSSNFQF QTPKHRDKDL GNATNSKIGK FGLMDPVMRD FAPAVPSGEM 60 ELNQDDDMAP WLNYPIDDSL QHDYCSELLP ELSGVTVNEL SAQNSFATID KRNSSNQTIR 120 GLNSVSVQNG LGLGLEQGEA AKASSLEGGE SSRSRSGQFY PWSFQASQTP VLRPGVSSNI 180 SNSTGNTKRD VCGDSIHAQA LAGGFPSIKT RKQDLGPSNP NSGIINFSLF SRPAALVQAN 240 LHNLGAMATP GTSGIEVMGG KNKEPCSSNL SESHSQPNLV PPKVDSKLIL VQPLEEPRTA 300 EQSEAVSQED AVKNDKSRNK VVGATMSKGF PDVEKTAEPV VASSSVCSGN SAERASNDPT 360 HNLKRKCRET DDSEGRSEDV EEESIGKRNA ATVRRGTGSK RSRAADVHNL SERVDKASML 420 DEAIEYLKTL QLQVQIMSMG AGIYMPPMML PMGMPHVHAA HMARFSPMGV SMGMGMGMGM 480 GFGMGMFDMN SGPPGCPMIQ VPPIQGPHFL GPRPAHGLGP TSFPGMAGPN LQVFGHPGQG 540 HAMSAPHAPT VPFLGGPPIN SAVELNASRM AAPVEFPNSA PSSNPKDLIQ NADLQMMHNT 600 DAGSSLNQAS SSQCRATNEG LEQSSLVLKN TQAPDIGSRE AVRLTKETDI VPSRPALIVS 660 GLRIDLLSLL LGSVASAAKV EQMISKKALR RRGPDSLGSK KVFLHSKISY AAEVQDIASR 720 IQIEEMTKND LQYHTETSIC ISSASDELFL VEEVLDKPKC IAEFYFIGAT LQLRGEVFGG 780 IYVRSDSNDA EVLLKALGKC CSCSSHEHIG ACHETGKEQN SVPDLLSTIK GPWALIYWQA 840 SSRTTWFGRD ALL*

Sequence ? help Back to Top

Protein Sequence Length: 854 aa Download sequence Send to blast

MMQGQSSRPR RNSTSSNFQF QTPKHRDKDL GNATNSKIGK FGLMDPVMRD FAPAVPSGEM  60
ELNQDDDMAP WLNYPIDDSL QHDYCSELLP ELSGVTVNEL SAQNSFATID KRNSSNQTIR  120
GLNSVSVQNG LGLGLEQGEA AKASSLEGGE SSRSRSGQFY PWSFQASQTP VLRPGVSSNI  180
SNSTGNTKRD VCGDSIHAQA LAGGFPSIKT RKQDLGPSNP NSGIINFSLF SRPAALVQAN  240
LHNLGAMATP GTSGIEVMGG KNKEPCSSNL SESHSQPNLV PPKVDSKLIL VQPLEEPRTA  300
EQSEAVSQED AVKNDKSRNK VVGATMSKGF PDVEKTAEPV VASSSVCSGN SAERASNDPT  360
HNLKRKCRET DDSEGRSEDV EEESIGKRNA ATVRRGTGSK RSRAADVHNL SERVDKASML  420
DEAIEYLKTL QLQVQIMSMG AGIYMPPMML PMGMPHVHAA HMARFSPMGV SMGMGMGMGM  480
GFGMGMFDMN SGPPGCPMIQ VPPIQGPHFL GPRPAHGLGP TSFPGMAGPN LQVFGHPGQG  540
HAMSAPHAPT VPFLGGPPIN SAVELNASRM AAPVEFPNSA PSSNPKDLIQ NADLQMMHNT  600
DAGSSLNQAS SSQCRATNEG LEQSSLVLKN TQAPDIGSRE AVRLTKETDI VPSRPALIVS  660
GLRIDLLSLL LGSVASAAKV EQMISKKALR RRGPDSLGSK KVFLHSKISY AAEVQDIASR  720
IQIEEMTKND LQYHTETSIC ISSASDELFL VEEVLDKPKC IAEFYFIGAT LQLRGEVFGG  780
IYVRSDSNDA EVLLKALGKC CSCSSHEHIG ACHETGKEQN SVPDLLSTIK GPWALIYWQA  840
SSRTTWFGRD ALL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028108728.1	0.0	transcription factor PIF3-like isoform X1
TrEMBL	A0A2R6R6L9	0.0	A0A2R6R6L9_ACTCH; Transcription factor like
STRING	VIT_14s0060g00260.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4965	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-28	phytochrome interacting factor 3