PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn215981 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 854aa MW: 91470.2 Da PI: 6.6277 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.4 | 0.00014 | 411 | 431 | 35 | 55 |
TS-STCHHHHHHHHHHHHHHH CS HLH 35 skKlsKaeiLekAveYIksLq 55 s++++Ka++L +A+eY+k Lq Achn215981 411 SERVDKASMLDEAIEYLKTLQ 431 7899****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 7.0E-5 | 410 | 439 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.13E-4 | 411 | 435 | No hit | No description |
SuperFamily | SSF47459 | 2.49E-6 | 411 | 455 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 854 aa Download sequence Send to blast |
MMQGQSSRPR RNSTSSNFQF QTPKHRDKDL GNATNSKIGK FGLMDPVMRD FAPAVPSGEM 60 ELNQDDDMAP WLNYPIDDSL QHDYCSELLP ELSGVTVNEL SAQNSFATID KRNSSNQTIR 120 GLNSVSVQNG LGLGLEQGEA AKASSLEGGE SSRSRSGQFY PWSFQASQTP VLRPGVSSNI 180 SNSTGNTKRD VCGDSIHAQA LAGGFPSIKT RKQDLGPSNP NSGIINFSLF SRPAALVQAN 240 LHNLGAMATP GTSGIEVMGG KNKEPCSSNL SESHSQPNLV PPKVDSKLIL VQPLEEPRTA 300 EQSEAVSQED AVKNDKSRNK VVGATMSKGF PDVEKTAEPV VASSSVCSGN SAERASNDPT 360 HNLKRKCRET DDSEGRSEDV EEESIGKRNA ATVRRGTGSK RSRAADVHNL SERVDKASML 420 DEAIEYLKTL QLQVQIMSMG AGIYMPPMML PMGMPHVHAA HMARFSPMGV SMGMGMGMGM 480 GFGMGMFDMN SGPPGCPMIQ VPPIQGPHFL GPRPAHGLGP TSFPGMAGPN LQVFGHPGQG 540 HAMSAPHAPT VPFLGGPPIN SAVELNASRM AAPVEFPNSA PSSNPKDLIQ NADLQMMHNT 600 DAGSSLNQAS SSQCRATNEG LEQSSLVLKN TQAPDIGSRE AVRLTKETDI VPSRPALIVS 660 GLRIDLLSLL LGSVASAAKV EQMISKKALR RRGPDSLGSK KVFLHSKISY AAEVQDIASR 720 IQIEEMTKND LQYHTETSIC ISSASDELFL VEEVLDKPKC IAEFYFIGAT LQLRGEVFGG 780 IYVRSDSNDA EVLLKALGKC CSCSSHEHIG ACHETGKEQN SVPDLLSTIK GPWALIYWQA 840 SSRTTWFGRD ALL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028108728.1 | 0.0 | transcription factor PIF3-like isoform X1 | ||||
TrEMBL | A0A2R6R6L9 | 0.0 | A0A2R6R6L9_ACTCH; Transcription factor like | ||||
STRING | VIT_14s0060g00260.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4965 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 1e-28 | phytochrome interacting factor 3 |