PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn214671
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 262aa    MW: 29222 Da    PI: 8.5709
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn214671genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.82.7e-17181215135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Achn214671 181 CYHCLAVKTPQWRAGPMGPKTLCNACGVRYKSGRL 215
                 *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.8E-15175225IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.939175211IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.14E-15177239No hitNo description
Gene3DG3DSA:3.30.50.107.2E-14178213IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.52E-13180228No hitNo description
PfamPF003205.4E-15181215IPR000679Zinc finger, GATA-type
PROSITE patternPS003440181206IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEAKRFTVED LLDFTLDVYE EENDDETKTQ KAPSPSSLES SNPNSHDPDE PRSFDIAEEE  60
LEWLSNKDAF PAVETCLDLL TDNPVTVLNH QSPVSVLENN TSTSNSSTIT SCFTGSILVP  120
ARFPVKARSK RRCRRRRLLS DLPSQPWWWW GQAKIKNAKQ GLARAPPSPP PPSATTIGRR  180
CYHCLAVKTP QWRAGPMGPK TLCNACGVRY KSGRLVPEYR PADSPTFSSK LHSNSHRKVM  240
EMRRQKQMGG MVNEACGYSV G*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028113026.14e-91GATA transcription factor 1-like
SwissprotQ8LAU92e-45GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A2R6PX750.0A0A2R6PX75_ACTCH; GATA transcription factor
STRINGMigut.N00329.1.p2e-68(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-45GATA transcription factor 1