PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn214091
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 591aa    MW: 66924.5 Da    PI: 9.0999
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn214091genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.84.3e-12538587147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r++W+t E++ l  +v+++G+g+Wk I +      + Rt+ ++k++w++ 
       Achn214091 538 RKKWSTMEEDTLRTGVQKFGTGNWKVILNSYRdvfEERTEVDLKDKWRNM 587
                      789********************************9************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.882533590IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-12534589IPR009057Homeodomain-like
SuperFamilySSF466891.01E-14535589IPR009057Homeodomain-like
SMARTSM007171.6E-8537590IPR001005SANT/Myb domain
PfamPF002493.5E-10538587IPR001005SANT/Myb domain
CDDcd116606.21E-18539589No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MAREAAPNPP KPTQNRPRPN RIELELEHEF KFEPPAYMGR RSRVLNLKFV SNLARKTNPM  60
ARLEVFPISS PYAQNLKKRK VQTQFYKSNQ IRTQGSDLLV PVNALPMDID VARWVLEFLL  120
RQSFDDRVLN ALLRVLPISN DDSRLKKAMF LRRIESEIAK GSVSEKVLEF LERIEELDYE  180
EKVATPEAMK RAYCSVAVDC TLRFLDEREK YFDAVKRIWS GKVWKMDRLE DVGLVSDELV  240
CWKDDIEAAV CDSSVCENVR MKSKGIEALK AVRTYVAKAW ESMGPSFLEV VAGTVSDDAM  300
REVLGWGSVG KYEQVVGERG ASLPDLSHDL TVHNGNKEMQ RGVVLPVRKH VAFKRSRGAT  360
SGTSRGSKID DTEEMDVRKS SNKYDCLPTP EINKVQEALR TSSLELQAAV KDPLPAALQL  420
ADNVISSMGG ESMIQGPSVG QGKVDAPDPF VGTRAETAPD NEANRDNQCC RPQNNVPKAS  480
LMARNSTAVA YEWDDSIDTL PEGSPGRGCR LHLPTPKRRL VSPLKKHENM NYVKRRIRKK  540
WSTMEEDTLR TGVQKFGTGN WKVILNSYRD VFEERTEVDL KDKWRNMIRY *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028056619.10.0uncharacterized protein LOC114260666 isoform X2
TrEMBLA0A2R6QSS90.0A0A2R6QSS9_ACTCH; Telomeric repeat-binding factor like
STRINGXP_009587848.11e-156(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.25e-26MYB_related family protein