PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn213901
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 667aa    MW: 72656.4 Da    PI: 6.0681
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn213901genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.6e-07265285526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C+ f++ GtC+ Gd C +aHg
  Achn213901 265 PCPEFRK-GTCRQGDACEYAHG 285
                 8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.205.3E-1418145IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.41E-1222138IPR020683Ankyrin repeat-containing domain
PfamPF127961.0E-656128IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0256191IPR002110Ankyrin repeat
PROSITE profilePS5029714.05361136IPR020683Ankyrin repeat-containing domain
CDDcd002043.28E-1263136No hitNo description
SMARTSM002480.1496128IPR002110Ankyrin repeat
PROSITE profilePS500889.93896131IPR002110Ankyrin repeat
SMARTSM003565.4E-5260286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4264287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.784265287IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4265285IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.944295319IPR000571Zinc finger, CCCH-type
SMARTSM0035631295318IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MEGIEFLRKD GVSGRFSVLL ELSASDNLTG FKIAVEEEGY DVDESSYWYG KRIGSKKMGF  60
EERTPLLIAA MYGSKQVLSY ILETGLVDVN KACGSDRATA LHCAVAGGSV SSLDVIKLLL  120
GACADANSVD ANGNRPSDLL VQSLNSSFNS RRKMLAGMLN VSSNCREESV LADQPIEHME  180
ELEDQQILTP HASKGGFERK EYPVDLSLPD IKNGIYGTDE FRMYTFKVKP CSRAYSHDWT  240
ECPFVHPGEN ARRRDPRKYH YSCVPCPEFR KGTCRQGDAC EYAHGIFESW LHPAQYRTRL  300
CKDETGCTRR VCFFAHKPEE LRPLYASTGS AVPSPRSYSN GASSLDMMSI SSFALGSPSL  360
LMHSNSTPPM TPLGASSPGS MWQNHPNIVP PTLQLPGSRL KTSMSARDMD FDPELLGLEN  420
HCLWQQQLMD EMSSLSSPTG WNNAFATTAA FGASSVDLHR LGGVKPSNLD DMFASQVQSP  480
SGIQIRQNVN QHLRSSYPTS LSSSPGRASP SFGIDPSGAA AAAVLNSRAT AFANRSQSFI  540
DRSTVSHLSG LASSATALPS TLSDWGSPDG KLDWGIQKED LHKLRKSASF GFRSNSNNSA  600
TPAASMLATD DEPNVCWVQS LVKDAPTVKS GPFNFEEQQF HLNSGGSEML PSWVEQLSVE  660
QEQIVV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024034674.10.0zinc finger CCCH domain-containing protein 66 isoform X2
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A2R6QSW40.0A0A2R6QSW4_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_006425080.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein