PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn213491

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 877aa MW: 99610.2 Da PI: 6.7165

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn213491	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.8	6.4e-17	85	158	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY+eYA++vGFs+++++ ++s+ +++ r+f C +eg +++++++ C+a+lk+++++ gkw v+k+++eH+H+ Achn213491 85 FYDEYARRVGFSTCVNQFSHSEPGDKTNAREFLCAREGLKRKNSER--------------CNAMLKIERKDPGKWIVSKFVKEHSHST 158 9************************************9998877..............************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-13	85	158	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-28	281	371	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.967	561	597	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.6E-10	563	595	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.6E-9	572	599	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 877 aa Download sequence Send to blast
MHNPGAVSLK DICTFGERIM DVETIDLENV DNYVEVDEGD LEINEHAVVG SDNSTENFLS 60 TQDEVWVDEP HVGMEFESED AAKTFYDEYA RRVGFSTCVN QFSHSEPGDK TNAREFLCAR 120 EGLKRKNSER CNAMLKIERK DPGKWIVSKF VKEHSHSTVT PSKVHYLRPR KLFSGTNKGM 180 DESYTDGRTS STVMMHVSVD GNHVSGERIR GNPQAKTLVR SGHRKGNIGD AQNLLDYFKN 240 MQAEHPGFYY AVQLDKSNCM TNVFWADARS RTAYRNFGDA VTFDTTSRTN NYKVPYASFT 300 GVNHHGQMVL FGCGLVVDES ESSFTWLFRT WLAAMNDRPP LSITTDQDKV IKSSVSKVFP 360 STRHRICKWH VLGEGQRRLG RLRKNHPAFN GDLYNCINMA ETIEEFESSW NSLIDKYHQQ 420 KNDWLQALYS TREHWVPVYF RDSFFASISS DQGSEAAVSF FDGYADEQTT LPMFFRQYER 480 ALEQSFQKEI EADFDTVCTM PLLKTPSPME KQAADVYTRK IFMKFQEELV ETFAYTANKE 540 YGDGPFSRYR VAKFEDQQKA YIVSLNILEL RATCSCQMFE YSGILCRHVL TVFTVTNVFT 600 LPSHYVKKRW TRHAKSEAGL DDRGVEVEGS ESLALRYNSL CREAMKYAEE GAIAVEMYSV 660 AMNAIREGRK KVAVAMKDAA KVTPKLQVCG SQEDGNKEID VSKAEMTPLL WPNVQVKHHP 720 SVNDSDMNRT PWRSYRDGAT HPLNRNNIGA CTPTPQKDLP YMAPLSLQRD DGTSNDMVIL 780 PYLRSMTWLM ENKSLRPAKR VAVINFKLRD YGNGTSGETE VKFQLSKVTL EPMLSSMASI 840 GEQLATASNQ VAVINLKLRK RMDFEECGKS MSDTCG*

Sequence ? help Back to Top

Protein Sequence Length: 877 aa Download sequence Send to blast

MHNPGAVSLK DICTFGERIM DVETIDLENV DNYVEVDEGD LEINEHAVVG SDNSTENFLS  60
TQDEVWVDEP HVGMEFESED AAKTFYDEYA RRVGFSTCVN QFSHSEPGDK TNAREFLCAR  120
EGLKRKNSER CNAMLKIERK DPGKWIVSKF VKEHSHSTVT PSKVHYLRPR KLFSGTNKGM  180
DESYTDGRTS STVMMHVSVD GNHVSGERIR GNPQAKTLVR SGHRKGNIGD AQNLLDYFKN  240
MQAEHPGFYY AVQLDKSNCM TNVFWADARS RTAYRNFGDA VTFDTTSRTN NYKVPYASFT  300
GVNHHGQMVL FGCGLVVDES ESSFTWLFRT WLAAMNDRPP LSITTDQDKV IKSSVSKVFP  360
STRHRICKWH VLGEGQRRLG RLRKNHPAFN GDLYNCINMA ETIEEFESSW NSLIDKYHQQ  420
KNDWLQALYS TREHWVPVYF RDSFFASISS DQGSEAAVSF FDGYADEQTT LPMFFRQYER  480
ALEQSFQKEI EADFDTVCTM PLLKTPSPME KQAADVYTRK IFMKFQEELV ETFAYTANKE  540
YGDGPFSRYR VAKFEDQQKA YIVSLNILEL RATCSCQMFE YSGILCRHVL TVFTVTNVFT  600
LPSHYVKKRW TRHAKSEAGL DDRGVEVEGS ESLALRYNSL CREAMKYAEE GAIAVEMYSV  660
AMNAIREGRK KVAVAMKDAA KVTPKLQVCG SQEDGNKEID VSKAEMTPLL WPNVQVKHHP  720
SVNDSDMNRT PWRSYRDGAT HPLNRNNIGA CTPTPQKDLP YMAPLSLQRD DGTSNDMVIL  780
PYLRSMTWLM ENKSLRPAKR VAVINFKLRD YGNGTSGETE VKFQLSKVTL EPMLSSMASI  840
GEQLATASNQ VAVINLKLRK RMDFEECGKS MSDTCG*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028096885.1	0.0	protein FAR1-RELATED SEQUENCE 3-like isoform X2
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2R6Q4C1	0.0	A0A2R6Q4C1_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	VIT_08s0040g00200.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]