PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn213491 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 877aa MW: 99610.2 Da PI: 6.7165 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 53.8 | 6.4e-17 | 85 | 158 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY+eYA++vGFs+++++ ++s+ +++ r+f C +eg +++++++ C+a+lk+++++ gkw v+k+++eH+H+ Achn213491 85 FYDEYARRVGFSTCVNQFSHSEPGDKTNAREFLCAREGLKRKNSER--------------CNAMLKIERKDPGKWIVSKFVKEHSHST 158 9**************************************9998877..............**************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-13 | 85 | 158 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.1E-28 | 281 | 371 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.967 | 561 | 597 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.6E-10 | 563 | 595 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.6E-9 | 572 | 599 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 877 aa Download sequence Send to blast |
MHNPGAVSLK DICTFGERIM DVETIDLENV DNYVEVDEGD LEINEHAVVG SDNSTENFLS 60 TQDEVWVDEP HVGMEFESED AAKTFYDEYA RRVGFSTCVN QFSHSEPGDK TNAREFLCAR 120 EGLKRKNSER CNAMLKIERK DPGKWIVSKF VKEHSHSTVT PSKVHYLRPR KLFSGTNKGM 180 DESYTDGRTS STVMMHVSVD GNHVSGERIR GNPQAKTLVR SGHRKGNIGD AQNLLDYFKN 240 MQAEHPGFYY AVQLDKSNCM TNVFWADARS RTAYRNFGDA VTFDTTSRTN NYKVPYASFT 300 GVNHHGQMVL FGCGLVVDES ESSFTWLFRT WLAAMNDRPP LSITTDQDKV IKSSVSKVFP 360 STRHRICKWH VLGEGQRRLG RLRKNHPAFN GDLYNCINMA ETIEEFESSW NSLIDKYHQQ 420 KNDWLQALYS TREHWVPVYF RDSFFASISS DQGSEAAVSF FDGYADEQTT LPMFFRQYER 480 ALEQSFQKEI EADFDTVCTM PLLKTPSPME KQAADVYTRK IFMKFQEELV ETFAYTANKE 540 YGDGPFSRYR VAKFEDQQKA YIVSLNILEL RATCSCQMFE YSGILCRHVL TVFTVTNVFT 600 LPSHYVKKRW TRHAKSEAGL DDRGVEVEGS ESLALRYNSL CREAMKYAEE GAIAVEMYSV 660 AMNAIREGRK KVAVAMKDAA KVTPKLQVCG SQEDGNKEID VSKAEMTPLL WPNVQVKHHP 720 SVNDSDMNRT PWRSYRDGAT HPLNRNNIGA CTPTPQKDLP YMAPLSLQRD DGTSNDMVIL 780 PYLRSMTWLM ENKSLRPAKR VAVINFKLRD YGNGTSGETE VKFQLSKVTL EPMLSSMASI 840 GEQLATASNQ VAVINLKLRK RMDFEECGKS MSDTCG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028096885.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3-like isoform X2 | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A2R6Q4C1 | 0.0 | A0A2R6Q4C1_ACTCH; Protein FAR1-RELATED SEQUENCE like | ||||
STRING | VIT_08s0040g00200.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA435 | 22 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 0.0 | FAR1-related sequence 3 |
Publications ? help Back to Top | |||
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