PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn213081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | AP2 | ||||||||
Protein Properties | Length: 285aa MW: 31531.6 Da PI: 6.5078 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.9 | 4.6e-12 | 45 | 100 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k++g Achn213081 45 IHRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 100 68******************99998898888888********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.28E-15 | 44 | 110 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.84E-12 | 44 | 149 | No hit | No description |
Pfam | PF00847 | 4.7E-8 | 45 | 100 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.268 | 45 | 108 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-19 | 45 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-5 | 46 | 57 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-12 | 46 | 109 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.05 | 115 | 153 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-5 | 122 | 149 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-6 | 122 | 148 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-5 | 129 | 149 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MAKISLKNGS NTRSSSSSSN HNTATKTKRT RKSIPRDSPP QRSSIHRGVT RHRWTGRYEA 60 HLWDKNCWNE SQNKKGRQGA YDDEEAAAHA YDLAALKYWG NDTLLNFPLS TYQEELKEME 120 ATQEEAATAY DMAAIEYRGL NAVTNFDLSR YIKWLRPNQN NTNPQPNPTP SNETGISFPH 180 QQSCSAAAAG ATTPPPRPTT CTTASSALGL LLQSSKFKEM LERTSATDCP LPPSKSDQPR 240 SSFPDDIHTY FHCQDSSEYA DGDDIIFGDL NSLASPIFSC ELDA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028051280.1 | 1e-138 | AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 | ||||
Refseq | XP_028051281.1 | 1e-138 | AP2-like ethylene-responsive transcription factor At1g16060 isoform X2 | ||||
TrEMBL | A0A2R6PDC5 | 1e-132 | A0A2R6PDC5_ACTCH; AP2-like ethylene-responsive transcription factor | ||||
STRING | cassava4.1_025233m | 1e-119 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1815 | 24 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.1 | 1e-39 | AP2 family protein |