PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn213081
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family AP2
Protein Properties Length: 285aa    MW: 31531.6 Da    PI: 6.5078
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn213081genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.94.6e-1245100255
         AP2   2 gykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  Achn213081  45 IHRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 100
                 68******************99998898888888********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.28E-1544110IPR016177DNA-binding domain
CDDcd000184.84E-1244149No hitNo description
PfamPF008474.7E-845100IPR001471AP2/ERF domain
PROSITE profilePS5103218.26845108IPR001471AP2/ERF domain
SMARTSM003801.3E-1945114IPR001471AP2/ERF domain
PRINTSPR003671.9E-54657IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-1246109IPR001471AP2/ERF domain
SMARTSM003800.05115153IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-5122149IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-6122148IPR001471AP2/ERF domain
PRINTSPR003671.9E-5129149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAKISLKNGS NTRSSSSSSN HNTATKTKRT RKSIPRDSPP QRSSIHRGVT RHRWTGRYEA  60
HLWDKNCWNE SQNKKGRQGA YDDEEAAAHA YDLAALKYWG NDTLLNFPLS TYQEELKEME  120
ATQEEAATAY DMAAIEYRGL NAVTNFDLSR YIKWLRPNQN NTNPQPNPTP SNETGISFPH  180
QQSCSAAAAG ATTPPPRPTT CTTASSALGL LLQSSKFKEM LERTSATDCP LPPSKSDQPR  240
SSFPDDIHTY FHCQDSSEYA DGDDIIFGDL NSLASPIFSC ELDA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051280.11e-138AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
RefseqXP_028051281.11e-138AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
TrEMBLA0A2R6PDC51e-132A0A2R6PDC5_ACTCH; AP2-like ethylene-responsive transcription factor
STRINGcassava4.1_025233m1e-119(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.11e-39AP2 family protein