PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn212121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | LBD | ||||||||
Protein Properties | Length: 1052aa MW: 113171 Da PI: 6.1293 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 53.9 | 5.1e-17 | 989 | 1045 | 32 | 88 |
DUF260 32 nvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 vh++FGasnv+kll++lp +r +a++++ yeA ar++dP+yG+v+ il+lqqq++ Achn212121 989 GVHRVFGASNVSKLLSRLPVIDRGEAAATMSYEALARMEDPIYGCVAQILALQQQVS 1045 59*****************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07990 | 1.4E-161 | 250 | 665 | IPR012940 | Nucleic acid binding NABP |
PROSITE profile | PS50303 | 133.329 | 646 | 986 | IPR033133 | Pumilio homology domain |
SuperFamily | SSF48371 | 1.58E-118 | 649 | 983 | IPR016024 | Armadillo-type fold |
Gene3D | G3DSA:1.25.10.10 | 4.4E-139 | 649 | 989 | IPR011989 | Armadillo-like helical |
CDD | cd07920 | 2.36E-172 | 662 | 982 | IPR033712 | Pumilio, RNA binding domain |
SMART | SM00025 | 2.3E-6 | 666 | 701 | IPR001313 | Pumilio RNA-binding repeat |
Pfam | PF00806 | 7.0E-7 | 666 | 699 | IPR001313 | Pumilio RNA-binding repeat |
PROSITE profile | PS50302 | 11.394 | 666 | 701 | IPR001313 | Pumilio RNA-binding repeat |
PROSITE profile | PS50302 | 9.947 | 702 | 737 | IPR001313 | Pumilio RNA-binding repeat |
SMART | SM00025 | 1.7E-6 | 702 | 737 | IPR001313 | Pumilio RNA-binding repeat |
Pfam | PF00806 | 3.7E-7 | 705 | 733 | IPR001313 | Pumilio RNA-binding repeat |
SMART | SM00025 | 3.2E-7 | 738 | 773 | IPR001313 | Pumilio RNA-binding repeat |
PROSITE profile | PS50302 | 10.857 | 738 | 773 | IPR001313 | Pumilio RNA-binding repeat |
Pfam | PF00806 | 4.5E-6 | 739 | 770 | IPR001313 | Pumilio RNA-binding repeat |
SMART | SM00025 | 4.0E-7 | 774 | 809 | IPR001313 | Pumilio RNA-binding repeat |
PROSITE profile | PS50302 | 7.521 | 774 | 797 | IPR001313 | Pumilio RNA-binding repeat |
Pfam | PF00806 | 5.9E-6 | 782 | 808 | IPR001313 | Pumilio RNA-binding repeat |
PROSITE profile | PS50302 | 11.044 | 809 | 845 | IPR001313 | Pumilio RNA-binding repeat |
SMART | SM00025 | 1.2E-6 | 810 | 845 | IPR001313 | Pumilio RNA-binding repeat |
Pfam | PF00806 | 2.5E-9 | 813 | 844 | IPR001313 | Pumilio RNA-binding repeat |
SMART | SM00025 | 1.1E-5 | 847 | 882 | IPR001313 | Pumilio RNA-binding repeat |
PROSITE profile | PS50302 | 12.047 | 847 | 883 | IPR001313 | Pumilio RNA-binding repeat |
Pfam | PF00806 | 1.4E-6 | 850 | 878 | IPR001313 | Pumilio RNA-binding repeat |
SMART | SM00025 | 5.3E-7 | 883 | 918 | IPR001313 | Pumilio RNA-binding repeat |
Pfam | PF00806 | 4.7E-5 | 883 | 914 | IPR001313 | Pumilio RNA-binding repeat |
PROSITE profile | PS50302 | 7.544 | 884 | 918 | IPR001313 | Pumilio RNA-binding repeat |
PROSITE profile | PS50302 | 9.597 | 919 | 960 | IPR001313 | Pumilio RNA-binding repeat |
SMART | SM00025 | 8.2E-7 | 925 | 960 | IPR001313 | Pumilio RNA-binding repeat |
Pfam | PF00806 | 2.8E-7 | 931 | 959 | IPR001313 | Pumilio RNA-binding repeat |
PROSITE profile | PS50891 | 9.75 | 945 | 1051 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-16 | 988 | 1045 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1052 aa Download sequence Send to blast |
MISDTGMRSV LQSSDYGEEL GLWQEASERE RELSRYRSGS APPTVEGSLS AVGGLFGGGS 60 GGVAADFVGV PEEEMRSDPA YVSYYYANVN LNPRLPPPLL SKEDWRYAQR LQGTGGGLGL 120 GGIGDGRKVS RGGEWGGDGL IGLSGLGLGS RKKSIAEIIQ DDISHATPVS RHPSRPASRN 180 AFNDGVESSE SHFAHLHHEL ASMDVLRSGA NIQGIPAAQS IGTSASHTYA SALAASLSRS 240 TTPDPQLVAR APSPHIPPVG VGRVSSMDKR NGNGSNSFNG VSPSMSEPAD LVAALSGMSL 300 STNGVVDEEN LARSVIQQEI DDHQDAFHLQ ADQNHIKQNP YINISESGKF HLHSASHGGV 360 EVDMNSSYLT ADGQVALHKP AVSSANSYLK GPPTPILNSG GSSASNYHNF GSPNSSFSNY 420 GFSGYAINPA SPTMMGNQTG NFPPLFENVV NASAMGVSGL DSRALGGGLA LGPNVMAVTA 480 ELQNFSRAGN HNAGSALQMP LMDPLYLQYL RTTEYAAAQA APFSDPTIDR EGIGNAYMDL 540 IGLQKAYLGS LHSPQKSQYG LPYLGKSGSL NHNYYGNPSF GLGINGMSYP GSPLAGPLLP 600 NSHIGSGSPV RHGERNMRFS SSLRNLAGGV MGSWQPEAGG SLDGHFASSL LDEFKSNKTR 660 CFELSEISGH VVEFSADQYG SRFIQQKLET ATTEEKNMVF HEIMPQALSL MTDVFGNYVI 720 QKFFEHGTAS QIGEMADQLT GHVLTLSLQM YGCRVIQKAI EVVDLDQQTR MVAELHGNVM 780 RCVRDQNGNH VIQKCIECIP QEAIEFIISV FYDQVVTLST HPYGCRVIQR VLEHCSDPKT 840 QSIVMDEVLQ SVIMLAQDQY GNYVVQHVLE HGKPHERSAI IIKLIGQIVQ MSQQKFASNV 900 IEKCLSFGTP AERQALVNEM LGTTDENEPL QVMMKDQFAN YVVQKVLETC DDQQLELILN 960 RIKVHLNALK KYTYGKHIVA RVEKLVAAGV HRVFGASNVS KLLSRLPVID RGEAAATMSY 1020 EALARMEDPI YGCVAQILAL QQQVSPSDLA L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3bsb_A | 1e-130 | 648 | 984 | 3 | 339 | Pumilio homolog 1 |
3bsb_B | 1e-130 | 648 | 984 | 3 | 339 | Pumilio homolog 1 |
3bsx_A | 1e-130 | 648 | 984 | 3 | 339 | Pumilio homolog 1 |
3bsx_B | 1e-130 | 648 | 984 | 3 | 339 | Pumilio homolog 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. Binds the APUM-binding elements (APBEs) in the 3'-UTR mRNA sequence of CLV1, PNH, WUS and FAS2. {ECO:0000269|PubMed:19682068}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028112756.1 | 0.0 | pumilio homolog 2-like | ||||
Swissprot | Q9ZW07 | 0.0 | PUM1_ARATH; Pumilio homolog 1 | ||||
TrEMBL | A0A2R6RWY8 | 0.0 | A0A2R6RWY8_ACTCH; Pumilio 2 like | ||||
STRING | VIT_13s0019g02000.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 6e-22 | lateral organ boundaries-domain 29 |
Publications ? help Back to Top | |||
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