PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn211521
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 724aa    MW: 78506.8 Da    PI: 6.0862
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn211521genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.6e-134534931055
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +rRRdriN+++  L+el+P++      K++Ka++L +A+eY+ksLq
  Achn211521 453 QRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKSLQ 493
                 79******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.754443492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-14449498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-10453493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.49E-13453497No hitNo description
Gene3DG3DSA:4.10.280.105.8E-16453501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.24E-15453515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MMQGQSSRAR RNPLSNNFQS QTAKIRDRDV WNVTDSKMGK FGVMDSVSGD LNMGLGEDDE  60
VVPWWNYPID DSLQYDYYSE VLPEISGVTV NELSAHNSLS INKRSSSNQT IRGTSSVSVH  120
TGSSLEQSNA SKVLTSEVDE SSRSRTSLLY PCLFHDSQTS IPSLRSEVSA IPSNNASNTK  180
HDVYRDSVQA QASADTFPSM KIQKQDSVPP NTNSGFMNFS HFSKPVALVR ANLQNVSAMA  240
GIGGDNKGAT APSSSNFAEP MLIDLSSGLE HETGTRSLPN LVPANVDSEP AVAKSLEESH  300
IAGQSLDVCR EDAVIDDKFP NQVLGPNASN SEKNIEPIVA SSSVCSRNSA ERASNDPTYS  360
LKRKYFEADD SEGRSGDVEE ESVGVKTAAA ARGGTGSKRS RAAEVHNLSE RVSKSIPNND  420
AYVVACFYLQ FLALDLEIYV KINWYSVLVV YKQRRRDRIN EKMRALQELI PNCNKVDKAS  480
MLDEAIEYLK SLQLQVQVPE PTMQGLHFSA RRPSPVVGPA NFQAMAESNI RVLGHVGQGI  540
PMPSPPAQLL PLSGGPPINS APGPNANGMA AVVEHPDSAP SSNSKTSIQN TNSQVMDNAD  600
ASDSMNQKST QCQASVLKSD QAPDVGSSDD SRKVNILTSY LICHGCVKFD SVSGVKLKTR  660
CALLCAGCDR LNFIREVKLF CSLFHFNFLF ASLETIDQLA RKPVRKISEF GEFAITVRVL  720
VGL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028108728.11e-180transcription factor PIF3-like isoform X1
TrEMBLA0A2R6Q1S30.0A0A2R6Q1S3_ACTCH; Transcription factor like
STRINGVIT_14s0060g00260.t011e-159(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49652437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-36phytochrome interacting factor 3