PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn211521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 724aa MW: 78506.8 Da PI: 6.0862 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.6 | 4.6e-13 | 453 | 493 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +rRRdriN+++ L+el+P++ K++Ka++L +A+eY+ksLq Achn211521 453 QRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKSLQ 493 79******************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.754 | 443 | 492 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-14 | 449 | 498 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-10 | 453 | 493 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.49E-13 | 453 | 497 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.8E-16 | 453 | 501 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.24E-15 | 453 | 515 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 724 aa Download sequence Send to blast |
MMQGQSSRAR RNPLSNNFQS QTAKIRDRDV WNVTDSKMGK FGVMDSVSGD LNMGLGEDDE 60 VVPWWNYPID DSLQYDYYSE VLPEISGVTV NELSAHNSLS INKRSSSNQT IRGTSSVSVH 120 TGSSLEQSNA SKVLTSEVDE SSRSRTSLLY PCLFHDSQTS IPSLRSEVSA IPSNNASNTK 180 HDVYRDSVQA QASADTFPSM KIQKQDSVPP NTNSGFMNFS HFSKPVALVR ANLQNVSAMA 240 GIGGDNKGAT APSSSNFAEP MLIDLSSGLE HETGTRSLPN LVPANVDSEP AVAKSLEESH 300 IAGQSLDVCR EDAVIDDKFP NQVLGPNASN SEKNIEPIVA SSSVCSRNSA ERASNDPTYS 360 LKRKYFEADD SEGRSGDVEE ESVGVKTAAA ARGGTGSKRS RAAEVHNLSE RVSKSIPNND 420 AYVVACFYLQ FLALDLEIYV KINWYSVLVV YKQRRRDRIN EKMRALQELI PNCNKVDKAS 480 MLDEAIEYLK SLQLQVQVPE PTMQGLHFSA RRPSPVVGPA NFQAMAESNI RVLGHVGQGI 540 PMPSPPAQLL PLSGGPPINS APGPNANGMA AVVEHPDSAP SSNSKTSIQN TNSQVMDNAD 600 ASDSMNQKST QCQASVLKSD QAPDVGSSDD SRKVNILTSY LICHGCVKFD SVSGVKLKTR 660 CALLCAGCDR LNFIREVKLF CSLFHFNFLF ASLETIDQLA RKPVRKISEF GEFAITVRVL 720 VGL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028108728.1 | 1e-180 | transcription factor PIF3-like isoform X1 | ||||
TrEMBL | A0A2R6Q1S3 | 0.0 | A0A2R6Q1S3_ACTCH; Transcription factor like | ||||
STRING | VIT_14s0060g00260.t01 | 1e-159 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4965 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 2e-36 | phytochrome interacting factor 3 |