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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn211081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 232aa MW: 26045.8 Da PI: 9.8775 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 99.8 | 2e-31 | 27 | 81 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +++YkeClkNhAa++Gg+a+DGC+Efmp +++gt +alkC+AC+CHRnFHR+e++ Achn211081 27 TYNYKECLKNHAAAIGGNATDGCREFMPG-SQQGTLEALKCSACNCHRNFHRKEMQ 81 789*************************9.7889*******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.3E-27 | 28 | 80 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.0E-28 | 29 | 80 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.171 | 30 | 79 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-20 | 30 | 85 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 5.28E-17 | 158 | 219 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.3E-26 | 159 | 219 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.9E-25 | 162 | 218 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MPDKVSKNSR LCMESGNGNV EHIHETTYNY KECLKNHAAA IGGNATDGCR EFMPGSQQGT 60 LEALKCSACN CHRNFHRKEM QVLLAELGYE TGFDYSSVRY HSPLGYSTRQ IQSLGHHKGE 120 VVDRELVGYP TGTLVSTRTA AHQMIVPYKM GVACHSSLEV GKKRLRTKFS REQKEKMLSF 180 AEKSGWKLQK LEKGAVHNFC QETGIKRRVL KVWMHNNKHL SLAKKTTTST I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-21 | 163 | 219 | 18 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003633412.1 | 3e-72 | PREDICTED: zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A2R6PAS5 | 1e-162 | A0A2R6PAS5_ACTCH; Zinc-finger homeodomain protein | ||||
STRING | VIT_12s0035g01880.t01 | 1e-71 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5154 | 23 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 8e-55 | homeobox protein 31 |