PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn210321 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 840aa MW: 96796 Da PI: 6.7143 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 83 | 5.1e-26 | 89 | 192 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerr........traetrtgCkaklkvkkekdgkwevtkle 82 +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ + + +r+ +t+Cka+++vk++ dgkw ++++e Achn210321 89 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYEKSlnqqrkrqgN----KqeidnstgRRSCAKTDCKACMHVKRRPDGKWIIHRFE 183 5*****************************************999997766665551....0445556669999************************* PP FAR1 83 leHnHelap 91 +eHnHel p Achn210321 184 KEHNHELLP 192 ******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-23 | 89 | 192 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.8E-30 | 291 | 382 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 8.951 | 570 | 606 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.0E-4 | 580 | 604 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.7E-7 | 581 | 608 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 840 aa Download sequence Send to blast |
MDIDLRLPSE EHEKEDEEPN GIDNMLDAED KLQNGDEGNG NLVDVVDELN LVDGRNMNSS 60 AVDIAVFKED ENLEPLTGME FESHGEAYSF YQEYARSMGF NTAIQNSRRS KTSREFIDAK 120 FACSRYGTKR EYEKSLNQQR KRQGNKQEID NSTGRRSCAK TDCKACMHVK RRPDGKWIIH 180 RFEKEHNHEL LPAQAVSDQT RKMYAALARQ FAEYKSVVGL KNDSKNPFDK GQYLTLEAGE 240 AKILLEFFTQ MQNANSNFFY AIDISEDQRL KNMFWLDAKS RHDYINFCDT VSFDTTYVRN 300 KYKMPLALFI GVNQHYQFML LGCALVADES ATTFSWVLQT WLRAMGEQAP KVIITDQDKA 360 MKSVISEVFP SSYHCFSLWH ILGKVSDNLS HLVKKHENFT AKLEKCIYRS WTHEEFEKRW 420 RKLVDRFELK ENEWIQSLLE DRTHWAPTYM RDVFLAGMYM PQRSESVNSF FDKYMHKKTS 480 VQEFLKQYEA ILQDRYEEEA KADSDTWNKQ PALKSPSPFE KQVSGVYTHA VFKKFQTEVL 540 GAVACHPKRE RHDETTITFR VQDFEKNQEF IVTWNGLKPE VSCLCRLFEF KGFLCRHALI 600 VLQICGLSNI PSQYILKRWT KDAKSRCLTG EAYEQVQARV QRYNDLCQRA MKLGEEGSLS 660 QESYNSAIHA LEDAFGNCVS LNNSNKNFVE TGTSATAGLL CIEEDNQSRN MSKTSKKKNP 720 TKKRKINSEQ DVMTVGPQDS LQQMVCPMEC LVRDKLSSRP VLDAYFGPQQ SMQGMVQLNL 780 MAPTRDNYYG TQQTIQGLGQ LNSIAPNHDG YYSNQPSLHG LEDPNVRSAQ LHDDASRHA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028080100.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Refseq | XP_028080101.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Swissprot | Q9LIE5 | 0.0 | FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | A0A2R6PUS0 | 0.0 | A0A2R6PUS0_ACTCH; Protein FAR-RED ELONGATED HYPOCOTYL like | ||||
STRING | EMJ16129 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA496 | 21 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 0.0 | far-red elongated hypocotyls 3 |