PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn209741 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 212aa MW: 22186.5 Da PI: 8.3957 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 77.2 | 2.3e-24 | 21 | 70 | 7 | 57 |
ZF-HD_dimer 7 keClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 eCl+NhAaslG++a+DGCgEf+ + + l+CaACgCHRnFHR+ + Achn209741 21 TECLRNHAASLGSYATDGCGEFTLDVSL-PGGGNLQCAACGCHRNFHRKAT 70 7***********************8444.56789**************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51523 | 20.565 | 20 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.7E-20 | 21 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 6.4E-21 | 21 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 8.0E-17 | 22 | 68 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-25 | 97 | 176 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.59E-13 | 98 | 174 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.0E-26 | 108 | 174 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 212 aa Download sequence Send to blast |
MTLPPMLPIS KAGDIGGHHT TECLRNHAAS LGSYATDGCG EFTLDVSLPG GGNLQCAACG 60 CHRNFHRKAT GGSGRGSSVV TTVLYGGGSG GMFVEEESEG AAGGGSGKKR FRTKFTAEQR 120 EKMLGFAEQI GWKMAQRRRD VGSGEDVGDE IERFCRGVGV SRQVFKVWMH NHKNNSSSST 180 SSSSATTTNT TNTTTATPNA SSSLTNFHSL D* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 8e-20 | 109 | 179 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022924045.1 | 1e-63 | zinc-finger homeodomain protein 8-like | ||||
Refseq | XP_023001812.1 | 1e-63 | zinc-finger homeodomain protein 8-like | ||||
Refseq | XP_023519958.1 | 1e-63 | zinc-finger homeodomain protein 8-like | ||||
Swissprot | A2XLF4 | 5e-37 | ZHD11_ORYSI; Zinc-finger homeodomain protein 11 | ||||
Swissprot | Q10DV5 | 5e-37 | ZHD11_ORYSJ; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | A0A2R6P302 | 1e-105 | A0A2R6P302_ACTCH; Zinc-finger homeodomain protein | ||||
STRING | XP_008467173.1 | 1e-62 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11865 | 20 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G18350.1 | 1e-30 | homeobox protein 24 |