PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn208181

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 296aa MW: 33006.8 Da PI: 9.919

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn208181	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.2	2e-33	4	76	56	129
NAM 56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 kewyfF+ +dkky+tg r+nrat++gyWkatgkdke+++ +++lvg+kktLvfykgrapkgekt+W+mheyrle Achn208181 4 KEWYFFCVNDKKYPTGLRTNRATATGYWKATGKDKEIFR-GKSLVGMKKTLVFYKGRAPKGEKTNWIMHEYRLE 76 79***********************************.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	38.771	1	100	IPR003441	NAC domain
SuperFamily	SSF101941	2.75E-37	3	100	IPR003441	NAC domain
Pfam	PF02365	1.1E-15	6	75	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MVGKEWYFFC VNDKKYPTGL RTNRATATGY WKATGKDKEI FRGKSLVGMK KTLVFYKGRA 60 PKGEKTNWIM HEYRLEGKFS LQNLPKIAKN ECVLCRIFQK TSGGQKIHFS GLVRLNSIGN 120 ELGPILPPLT DSFPFRPKSP TASESVHVSC FSNSIDIPKT QQEKIEYVNN PLISGGASSI 180 PPDIFSRIAI PNPFYLAQAA PIQGNLQYPG PFSMQDQAIL RDLLENYGPN TKQSHKTEKK 240 MVSVSQETGL SNDMNTEISS VVSNLEMRRR GFQDQIQGAP STSVGPIDPG YIWNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-30	4	106	71	171	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-30	4	106	71	171	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-30	4	106	71	171	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-30	4	106	71	171	NO APICAL MERISTEM PROTEIN
3swm_A	8e-30	4	106	74	174	NAC domain-containing protein 19
3swm_B	8e-30	4	106	74	174	NAC domain-containing protein 19
3swm_C	8e-30	4	106	74	174	NAC domain-containing protein 19
3swm_D	8e-30	4	106	74	174	NAC domain-containing protein 19
3swp_A	8e-30	4	106	74	174	NAC domain-containing protein 19
3swp_B	8e-30	4	106	74	174	NAC domain-containing protein 19
3swp_C	8e-30	4	106	74	174	NAC domain-containing protein 19
3swp_D	8e-30	4	106	74	174	NAC domain-containing protein 19
4dul_A	8e-30	4	106	71	171	NAC domain-containing protein 19
4dul_B	8e-30	4	106	71	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028056118.1	1e-161	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-101	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2R6QH34	0.0	A0A2R6QH34_ACTCH; NAC domain-containing protein
TrEMBL	A0A3S8T949	0.0	A0A3S8T949_ACTDE; NAC transcription factor 6
STRING	cassava4.1_010528m	1e-143	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-103	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]