PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn208081

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

MYB_related

Protein Properties

Length: 264aa MW: 30357.2 Da PI: 7.2502

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn208081	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.9	2.7e-14	102	146	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E++l++ + +++G+g+W++I+r+ ++t+ q+ s+ qk+ Achn208081 102 PWTEQEHQLFLMGLNKYGKGDWRSISRYYVVTKTPTQVASHAQKF 146 8******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	7.441	1	53	IPR017884	SANT domain
SMART	SM00717	0.0018	2	51	IPR001005	SANT/Myb domain
CDD	cd00167	1.13E-7	2	45	No hit	No description
SuperFamily	SSF46689	1.0E-7	3	54	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.827	95	151	IPR017930	Myb domain
SuperFamily	SSF46689	3.52E-16	96	152	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.8E-17	98	150	IPR006447	Myb domain, plants
SMART	SM00717	1.1E-11	99	149	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-10	101	143	IPR009057	Homeodomain-like
Pfam	PF00249	7.0E-12	102	145	IPR001005	SANT/Myb domain
CDD	cd00167	3.00E-10	102	147	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MEWTFEENKV FENALAEFGL NSPAFFEHVA SKLPYKSMEQ IKRHYDCLIE DVEMIESDLF 60 PTPKYESPEE SIQGDVETKS EKACAKQARK AVSGHQRKRG VPWTEQEHQL FLMGLNKYGK 120 GDWRSISRYY VVTKTPTQVA SHAQKFFRRQ TSTTPTDRRR PSIHDIQTVN STFFSVPQKH 180 KSPILTNELQ TLDVVPLPNP YDLIPMYNHT FPNNDLTNFS NEIPVLPPGT STFPMVMNSF 240 FNYPSGVYPC SSSYPIPYPR NYP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028074067.1	1e-93	transcription factor SRM1-like
Swissprot	Q9FNN6	8e-55	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A2R6R600	0.0	A0A2R6R600_ACTCH; Transcription factor DIVARICATA like
STRING	Migut.L00854.1.p	3e-80	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5234	20	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	5e-51	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]