PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn206921
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 285aa    MW: 31854.8 Da    PI: 10.4981
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn206921genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF689.1e-22111159149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                 k+i+  s+ qvtfskR++g++KKA ELSvLC+++vavi +s+ g+++ +
  Achn206921 111 KKIQKRSQLQVTFSKRKAGLFKKAGELSVLCGVDVAVIAVSPAGNVFAF 159
                 678999999************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.7E-28103162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.278103163IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-24104173IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-17105125IPR002100Transcription factor, MADS-box
PfamPF003194.2E-22112159IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-17125140IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-17140161IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MHNLKGRWNK KKFRRKWMKR IVAFILQFQH ISNEICPKKK IKNFPRTNRI LQQTTRKIRD  60
LNSIIALNTT PTTLINPGLL SLSLSLKRNS QAMETSEKKK TTRGRQRIEI KKIQKRSQLQ  120
VTFSKRKAGL FKKAGELSVL CGVDVAVIAV SPAGNVFAFG SPSADAVVNR FLGRDSGKDG  180
GHGGQWKERE REKAAGGGGF SWDRPVGELG LGELERYMAA LEELKCKVRR RADELAVAEV  240
AGEMESDLPE NFLDSVSGTG GAMVDPFCGF EENYFDFGCN YYCM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002264830.24e-37PREDICTED: agamous-like MADS-box protein AGL62
RefseqXP_028061661.17e-37agamous-like MADS-box protein AGL62
TrEMBLA0A2R6Q2101e-127A0A2R6Q210_ACTCH; Agamous-like MADS-box protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-23AGAMOUS-like 62