PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn205741
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 294aa    MW: 32545.5 Da    PI: 7.2003
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn205741genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-05426123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ykC+ C+k F +   L  H+r+H
  Achn205741  4 YKCKLCSKAFANGRALGGHMRSH 26
                9*********************9 PP
2zf-C2H211.10.0013167189123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y C+ Cgk+F++   L  H  +H
  Achn205741 167 YLCETCGKVFNSFQALGGHRTSH 189
                 56**********99998888777 PP
3zf-C2H210.90.0015212234123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C k+F +   L  H r+H
  Achn205741 212 HECPICYKVFGSGQALGGHKRSH 234
                 79**************9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.3E-8327IPR007087Zinc finger, C2H2
SuperFamilySSF576674.13E-10326No hitNo description
Gene3DG3DSA:3.30.160.601.2E-4426IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0055426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.279431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576674.13E-10162189No hitNo description
PROSITE profilePS5015710.99167194IPR007087Zinc finger, C2H2
SMARTSM003550.21167189IPR015880Zinc finger, C2H2-like
PfamPF139126.4E-10167191IPR007087Zinc finger, C2H2
PROSITE patternPS000280169189IPR007087Zinc finger, C2H2
SuperFamilySSF576677.77E-6208242No hitNo description
PROSITE profilePS501579.452212239IPR007087Zinc finger, C2H2
SMARTSM003550.25212234IPR015880Zinc finger, C2H2-like
PfamPF139128.4E-13212234IPR007087Zinc finger, C2H2
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MERYKCKLCS KAFANGRALG GHMRSHLANL PIPPKTQQKQ LIDGTESTES ASSLSSSERD  60
SEEKGIVYGL RENPKKSFKV VDPEFLESVV QDRESETESP KNPTRQRRSK RTRTMREPGS  120
TELEPVSSVS DTSPEEDIAL CLMMLSRDTW SSSDDVSELR PSQTRKYLCE TCGKVFNSFQ  180
ALGGHRTSHK KKEDLSEPKR RGGTPIGDQK IHECPICYKV FGSGQALGGH KRSHFVAKIG  240
ECLVAKKCEK FGESLIDLNF PAPMEEDDFS QPEVSAVSDA EFGNSTIQCG HHS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028063607.11e-104zinc finger protein ZAT1-like
TrEMBLA0A2R6QNN10.0A0A2R6QNN1_ACTCH; Zinc finger protein
STRINGXP_010258927.11e-92(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.15e-48C2H2-like zinc finger protein