PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn205731
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 367aa    MW: 40875.4 Da    PI: 6.7053
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn205731genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00032141163123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C+k+F+++  L  H  +H
  Achn205731 141 FQCKNCKKVFNSHQALGGHRASH 163
                 89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.97E-61139No hitNo description
PROSITE profilePS5015710.0141340IPR007087Zinc finger, C2H2
SMARTSM003550.421335IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
PfamPF139122.2E-41535IPR007087Zinc finger, C2H2
SuperFamilySSF576674.9E-8141163No hitNo description
SMARTSM003550.064141163IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097141168IPR007087Zinc finger, C2H2
PfamPF139124.6E-9141165IPR007087Zinc finger, C2H2
PROSITE patternPS000280143163IPR007087Zinc finger, C2H2
SuperFamilySSF576674.9E-8213240No hitNo description
SMARTSM003550.31218240IPR015880Zinc finger, C2H2-like
PfamPF139127.6E-12218241IPR007087Zinc finger, C2H2
PROSITE profilePS501579.39218240IPR007087Zinc finger, C2H2
PROSITE patternPS000280220240IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEENSDQQPR MMHFCKVCNK GFSCGGALGG HMRAHGTEDH STSEFRDKTE GNKRTYFLRT  60
TTNRFVSHRS REDCGKSFLS GKYSMDDPAG DTRSFNSSTI KGTCASSEER ELASCLVMLS  120
NGEAIGDSFP LADNEGAKGN FQCKNCKKVF NSHQALGGHR ASHKKVKGCF AARFDIVDDD  180
DGDNIDVDDD PTLPPTINVK RKSETQLSSP SKRKLKEHKC SICHRVFSSG QALGGHKRCH  240
WLSSNIHETY SMPMFCEPHY EREQVVRTSV FDKSESLDLN IPTLLDDIPS KFQDLTRIYL  300
PSREKEDISG IHERSYCSLH DGNSEEYNSK VEIAKIGELR EMNFDGECSK WLQVGIAPAS  360
NGGTDS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028063611.13e-87uncharacterized protein LOC114266875
TrEMBLA0A061DW897e-82A0A061DW89_THECC; C2H2-type zinc finger family protein
STRINGEOX963311e-82(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.16e-28C2H2-like zinc finger protein