PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn205731 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | C2H2 | ||||||||
Protein Properties | Length: 367aa MW: 40875.4 Da PI: 6.7053 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00032 | 141 | 163 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k+F+++ L H +H Achn205731 141 FQCKNCKKVFNSHQALGGHRASH 163 89**************9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.97E-6 | 11 | 39 | No hit | No description |
PROSITE profile | PS50157 | 10.014 | 13 | 40 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.42 | 13 | 35 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 15 | 35 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.2E-4 | 15 | 35 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.9E-8 | 141 | 163 | No hit | No description |
SMART | SM00355 | 0.064 | 141 | 163 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.097 | 141 | 168 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.6E-9 | 141 | 165 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 143 | 163 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.9E-8 | 213 | 240 | No hit | No description |
SMART | SM00355 | 0.31 | 218 | 240 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 7.6E-12 | 218 | 241 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.39 | 218 | 240 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 220 | 240 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MEENSDQQPR MMHFCKVCNK GFSCGGALGG HMRAHGTEDH STSEFRDKTE GNKRTYFLRT 60 TTNRFVSHRS REDCGKSFLS GKYSMDDPAG DTRSFNSSTI KGTCASSEER ELASCLVMLS 120 NGEAIGDSFP LADNEGAKGN FQCKNCKKVF NSHQALGGHR ASHKKVKGCF AARFDIVDDD 180 DGDNIDVDDD PTLPPTINVK RKSETQLSSP SKRKLKEHKC SICHRVFSSG QALGGHKRCH 240 WLSSNIHETY SMPMFCEPHY EREQVVRTSV FDKSESLDLN IPTLLDDIPS KFQDLTRIYL 300 PSREKEDISG IHERSYCSLH DGNSEEYNSK VEIAKIGELR EMNFDGECSK WLQVGIAPAS 360 NGGTDS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028063611.1 | 3e-87 | uncharacterized protein LOC114266875 | ||||
TrEMBL | A0A061DW89 | 7e-82 | A0A061DW89_THECC; C2H2-type zinc finger family protein | ||||
STRING | EOX96331 | 1e-82 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1910 | 22 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 6e-28 | C2H2-like zinc finger protein |